Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1635 ATGGGTTCTTCTTCGTCTTCTTTTTCAGTCATCAAATGGTTCTCTTTCTGCAGACCCACCTCTCCAATTCTTCTTTCCAAGCTCTTTTTGCTCTTCTCTATCCTCTTCTTCTTTCAGTCTGATGTTATTTTCGGCGATTCCGACAAATCCGTCCTTCTTCAGTTCAAAAATGCTCTTTCCGACCCATCTGCCTTGCTTTCCACCTGGACTCCCACTGGTTCTGACTACTGCTTCTGGTTTGGCGTTTCCTGCGACTTCAATTCTCGGGTTGTCTCTCTCAACATTTCTGGGAATGGTGGTTCAGGTAATTTCAATGCCTTTTCCTGCTCTGTTTCTTCTAAATTCCCTCTTTATGGACTTGGAATCAGGAGGGGTTGTGTGGCTAATAGAGGCCTACTCATTGGGAAGCTTCCGCCGGTTATTGGGAACCTCACTCAGCTCAGGACTTTGTCTCTTCCGTTTCATGCTTTTGAGGGTGAGCTTCCTCGTGAAATCTTTGGATTGGAGAACCTTGAGGTTCTTGATCTGGAAGGGAACTCTGTCACTGGGTTGCTTCCTAATGATTTTGCCAGGCTGAACAAGTTGCGTGTTCTCAATCTTGCATTCAATAAGCTTACTGGTGAGATTCCTAGCTCGCTTTCGGGTTGTCAGAGTTTAGAGATCTTGAATATAGCTGGGAATCAGTTGAATGGGACAATTCCACAGTTTGTTGGTCATTTGAGAGGGGTCTACTTGTCTTTCAATTTTTTTACGGGATCCATTCCGAGTGAGCTTGGGAATAACTGTGAAAAGCTTGAGCATCTCGACCTGTCTGGTAATTTTTTGGTCAGTGGGATTCCAAGCAATCTGGGAAATTGCACACAGTTGCAGACATTGTTGCTGTATTCCAATATGCTGGAGGAGGCCATTCCAGCTGGAATTGGTAAGTTGCAGAAGCTGGAAGTGCTCGATCTTTCGAGGAATAGCCTCAGTGGTCCAATACCCTCCGAGCTAGGAAATTGCTTGCAGTTGTCTGTCCTCGTGCTCTCGAATCTCTTCAATCCAATTCCCAAGATCAACTACACAGACGGCGACTCTCCAACTGAGGAACTTAGTGATGATAGTTTTAACTATTTTGCGGGTGGTATACCTGAGACAATAACAGCCCTTCCAAAGCTGAGGATATTGTGGGCCCCTAGTGCAAACCTCAATGGCAGATTCCCTTCCCAATGGGGTAAGTGCGAAAGCTTGGAGATGATCAACTTAGCTGGTAATTACCTTTATGGGGAGCTTCCCAGTGGGTTTAGCGTCTGCAACAAGCTTCAAGTCCTTGATTTAAGCTCAAACCGGCTTTCTGGAGAACTTGATAAAAACCTACCAGTTCCTTACATGACTCTGTTTGATCTTAGCCATAACCACTTTACTGGTGAGATTCCTACGTTCTGTGGCAATGATTGCTCACCACCAAATTTCCGTTTAAATGGATATTTGGATCTTGACGATGCCTCGTCTCGGTATCTAGCATTTTTTGCCACTAGTATTCGAAATGCAACCCCTTTTGAATTTATTGGAAATGGTGATCTGATAATACATAACTTTGGGGACAATAACTTTACAGGCAATCTTCTGTCATTGCCGTTTCCACGTGATAGTCTGGGAAGGAAAACTGTTTATGCTTATCTTGTAGGTGGGAATAAGCTGACTGGACCATTTCCAGATAGTTTGTTTGATAAATGTGACGATTTGGGGGGGTTGATCTTTAATATTAGCAGCAATAAAATATCTGGTCCATTTTCTGTGTCAATTGGTAAGAAGTGTGGTTCTCTCAAATTCTTGGATGCATCTGGTAATCAGATGATTGGGCAGGTACCTGCTAGCTTTGGGGAGCTACTATCTCTGAATCACCTGAACCTAAGTTGGAACAAGTTTCAGTATCAAATACCTACTTCTCTCGGACATATGGCTGATTTGAAGTACCTTTGTTTGGCTGGCAATAACTTTAATGGTTCTATACCTTCTACCTTGGGAAAGTTGAAGTCTTTGGAGTTGCTGGATCTTTCATATAACGATCTTTCGGGTGAAATTCCAATAGATCTTGTTAACTTGAGAGGCCTAAAAGTTCTGCTGCTCAACAATAATTCACTCTCTGGACAGGTTCCCTCTGGTTTAGCAAATGTTACCACACTCTCTGCATTTAATGTGTCATTCAATAATTTGTCTGGTTCCCTGCCATCAAATAACAACATGATTAAATGTAGTGGTGCAATTGGAAATCCTTACCTACGCCCGTGCCATATGTATTCTCTGGCAGTCCCATCATCCGAAATGCAAGGTTCATATGGTGACCCAAGTAGTTTTGCAGCTTCACCGTCTGTTGTTGCACCCCAAACAAGTGGAGGTGGCAGCTTCAATTCCATTGAGATAGCATCCATTACGTCTGCCTCTGCCATTGTTTCTGTTCTTATTGCTTTGATTATCCTATTTCTATATACACGAAAGTGGAACTCGAGATCTAAAGTTCTTGGCTCAATGAGAAAGGAAGTGACGGTTTTTACCGATATTGGGGTTTCCCTGACGTTTGAGAATGTGGTGCGTGCTACAAGTAATTTCAATGCAAGCAACTGCATTGGCAGTGGAGGGTTTGGGGCAACTTACAAGGCAGAGATCTCGTCAGGAGTGCTGGTTGCAATAAAACGACTTGCTGTAGGTCGATTTCAAGGTGTCCAACAGTTTGATGCAGAAATTAAAACTCTTGGAAGGCTGCGCCATCCAAACCTTGTCACCTTAATTGGTTACCATGCCAGTGAAACAGAGATGTTCCTGATATATAATTATTTGCCTGGAGGTAATTTGGAAAAATTCATCCAGGAGAGGTCTACAAGAGCAGTTGATTGGAGAATTCTTCACAAGATTGCACTGGACATAGCCCGTGCGCTCGCGTATCTTCATGATCAGTGTGTACCACGAGTCCTCCACCGCGATGTGAAACCGAGTAATATACTATTAGATGATGATTTCAATGCTTATCTCTCTGATTTTGGATTGGCCAGGCTTCTTGGGACTTCTGAAACCCATGCTACAACCGGTGTGGCTGGAACTTTCGGCTATGTCGCTCCTGAATATGCCATGACTTGCCGTGTCTCTGATAAAGCAGACGTGTACAGTTACGGTGTGGTGCTTCTCGAGCTACTCTCAGACAAGAAAGCATTAGATCCCTCGTTTTCCTCGTATGGTAATGGTTTTAACATAGTAGCTTGGGCATGTATGCTGCTTCGGCAGGGGCGCGCCAAGGAATTCTTCACGGCAGGGTTATGGGAGGTTGGCCCTCATGATGATTTAGTTGAAGTTTTACATTTGGCAGTTGTTTGTACAGTTGACTCTCTGTCGACTAGGCCGACGATGAAGCAAGTCGTACGACGGCTTAAGCAGCTTCAACCGCCATCATGTTAG 3429 43.95 MGSSSSSFSVIKWFSFCRPTSPILLSKLFLLFSILFFFQSDVIFGDSDKSVLLQFKNALSDPSALLSTWTPTGSDYCFWFGVSCDFNSRVVSLNISGNGGSGNFNAFSCSVSSKFPLYGLGIRRGCVANRGLLIGKLPPVIGNLTQLRTLSLPFHAFEGELPREIFGLENLEVLDLEGNSVTGLLPNDFARLNKLRVLNLAFNKLTGEIPSSLSGCQSLEILNIAGNQLNGTIPQFVGHLRGVYLSFNFFTGSIPSELGNNCEKLEHLDLSGNFLVSGIPSNLGNCTQLQTLLLYSNMLEEAIPAGIGKLQKLEVLDLSRNSLSGPIPSELGNCLQLSVLVLSNLFNPIPKINYTDGDSPTEELSDDSFNYFAGGIPETITALPKLRILWAPSANLNGRFPSQWGKCESLEMINLAGNYLYGELPSGFSVCNKLQVLDLSSNRLSGELDKNLPVPYMTLFDLSHNHFTGEIPTFCGNDCSPPNFRLNGYLDLDDASSRYLAFFATSIRNATPFEFIGNGDLIIHNFGDNNFTGNLLSLPFPRDSLGRKTVYAYLVGGNKLTGPFPDSLFDKCDDLGGLIFNISSNKISGPFSVSIGKKCGSLKFLDASGNQMIGQVPASFGELLSLNHLNLSWNKFQYQIPTSLGHMADLKYLCLAGNNFNGSIPSTLGKLKSLELLDLSYNDLSGEIPIDLVNLRGLKVLLLNNNSLSGQVPSGLANVTTLSAFNVSFNNLSGSLPSNNNMIKCSGAIGNPYLRPCHMYSLAVPSSEMQGSYGDPSSFAASPSVVAPQTSGGGSFNSIEIASITSASAIVSVLIALIILFLYTRKWNSRSKVLGSMRKEVTVFTDIGVSLTFENVVRATSNFNASNCIGSGGFGATYKAEISSGVLVAIKRLAVGRFQGVQQFDAEIKTLGRLRHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLRQGRAKEFFTAGLWEVGPHDDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30916047 30919475 - ClG42_07g0163500.10 Clacu07g1635 254233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1635 1142 Pfam Leucine Rich Repeat 433 452 IPR001611 GO:0005515(InterPro)
Clacu07g1635 1142 Pfam Leucine Rich Repeat 625 647 IPR001611 GO:0005515(InterPro)
Clacu07g1635 1142 Pfam Leucine Rich Repeat 312 334 IPR001611 GO:0005515(InterPro)
Clacu07g1635 1142 Pfam Leucine Rich Repeat 239 260 IPR001611 GO:0005515(InterPro)
Clacu07g1635 1142 Pfam Leucine Rich Repeat 698 718 IPR001611 GO:0005515(InterPro)
Clacu07g1635 1142 Pfam Leucine Rich Repeat 650 671 IPR001611 GO:0005515(InterPro)
Clacu07g1635 1142 Pfam Leucine Rich Repeat 264 286 IPR001611 GO:0005515(InterPro)
Clacu07g1635 1142 Pfam Leucine Rich Repeat 673 695 IPR001611 GO:0005515(InterPro)
Clacu07g1635 1142 Pfam Leucine rich repeat 170 229 IPR001611 GO:0005515(InterPro)
Clacu07g1635 1142 Gene3D Phosphorylase Kinase; domain 1 825 938 - -
Clacu07g1635 1142 ProSitePatterns Protein kinases ATP-binding region signature. 869 891 IPR017441 GO:0005524(InterPro)
Clacu07g1635 1142 Gene3D Ribonuclease Inhibitor 45 237 IPR032675 -
Clacu07g1635 1142 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 364 448 - -
Clacu07g1635 1142 ProSitePatterns Serine/Threonine protein kinases active-site signature. 983 995 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1635 1142 SUPERFAMILY Protein kinase-like (PK-like) 848 1134 IPR011009 -
Clacu07g1635 1142 SUPERFAMILY L domain-like 239 739 - -
Clacu07g1635 1142 ProSiteProfiles Protein kinase domain profile. 863 1137 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1635 1142 Gene3D Ribonuclease Inhibitor 239 448 IPR032675 -
Clacu07g1635 1142 Gene3D Ribonuclease Inhibitor 456 761 IPR032675 -
Clacu07g1635 1142 Pfam Leucine rich repeat N-terminal domain 46 85 IPR013210 -
Clacu07g1635 1142 Gene3D Transferase(Phosphotransferase) domain 1 939 1139 - -
Clacu07g1635 1142 SMART LRR_typ_2 623 647 IPR003591 -
Clacu07g1635 1142 SMART LRR_typ_2 168 191 IPR003591 -
Clacu07g1635 1142 SMART LRR_typ_2 237 261 IPR003591 -
Clacu07g1635 1142 SMART LRR_typ_2 262 286 IPR003591 -
Clacu07g1635 1142 SMART LRR_typ_2 671 695 IPR003591 -
Clacu07g1635 1142 SMART LRR_typ_2 192 216 IPR003591 -
Clacu07g1635 1142 SMART LRR_typ_2 310 334 IPR003591 -
Clacu07g1635 1142 SMART serkin_6 863 1141 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1635 1142 CDD STKc_IRAK 869 1137 - -
Clacu07g1635 1142 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 260 350 - -
Clacu07g1635 1142 SUPERFAMILY L domain-like 47 345 - -
Clacu07g1635 1142 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 939 1141 - -
Clacu07g1635 1142 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 519 762 - -
Clacu07g1635 1142 PANTHER RECEPTOR-LIKE PROTEIN 55 628 1135 - -
Clacu07g1635 1142 PRINTS Leucine-rich repeat signature 671 684 - -
Clacu07g1635 1142 PRINTS Leucine-rich repeat signature 434 447 - -
Clacu07g1635 1142 Pfam Protein kinase domain 866 1064 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1635 1142 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 827 938 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1635 Clacu-Chr7:30916047 Clacu05g2516 Clacu-Chr5:33270190 1.10E-59 dispersed
Clacu01g0788 Clacu-Chr1:8536825 Clacu07g1635 Clacu-Chr7:30916047 6.70E-11 transposed
Clacu11g0675 Clacu-Chr11:6517974 Clacu07g1635 Clacu-Chr7:30916047 2.50E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73726 PF00069 Pkinase 9.90E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1635 - - - 0.0