Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1656 ATGCCTGCAGACAAACATGATGAGAGACATAATATGATTAAAAATTCTAAAGAAGAGAATTCACCACCTCCAAAACTAGCAGCAGCAGGAGGTTCATCAAGCTCATCGTTGGCGGCGGCCACGCCATGGCTTAGGTTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGGCTGCGCGACAGGCGTGTAAGGCTTTCGGTTTCAACCGCAATTCAGCTCTATGATCTTCAAGACCGGCTTGGGCTTAATCAGCCGAGCAAGGTCGTCGACTGGTTGCTGAACGCCGCCAAGGATGAAATCGACGAACTCCCTCCATTGCCAATCCCATCGGCAAGCCTTGGCCTTCACTATCAATCTATGCTACCACCAACTGTGCACCACCCGCATAGATCAGAGTTCAAAATCAACTGCATCGACAAGGCCGAGGTCAAGGACGAGACCGAATTGGAAAAGCAACAGAAATCAAATAATAATTCTAATAATCCCTCTCATCCTTCTTCCTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTTTTATTGGGATCATAATCCTCCATCATCATCGACATCATCATCAACAACAACAACAAATAATCTTCCATTTCTTACATCTCAACAACCTCAGGATAATAATAATCTTCATAACTTCAATCATCTCAATTTGTCTTTGCCTTCCCCTTTGTCTCTTGAGTTCAATCACTTGCACCAAAATTTCTTCATTAACAATAATTCTCTCAATAATACACCTCCTAATTTCCACCCCGCTGTTAGGCCTTTTCATTTTAGTATGGCTACCAAATTCCTTTCTCAAGACAAGAATAACAATAATAATGCAGATAATCCTCCAAATAAGGATCATGGCTTTGCTTCTGATGAATGA 936 43.7 MPADKHDERHNMIKNSKEENSPPPKLAAAGGSSSSSLAAATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGLHYQSMLPPTVHHPHRSEFKINCIDKAEVKDETELEKQQKSNNNSNNPSHPSSFSALLNNVSAPPFGFYWDHNPPSSSTSSSTTTTNNLPFLTSQQPQDNNNLHNFNHLNLSLPSPLSLEFNHLHQNFFINNNSLNNTPPNFHPAVRPFHFSMATKFLSQDKNNNNNADNPPNKDHGFASDE 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31184883 31186394 - ClG42_07g0165600.10 Clacu07g1656 254254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1656 311 MobiDBLite consensus disorder prediction 160 185 - -
Clacu07g1656 311 ProSiteProfiles TCP domain profile. 60 118 IPR017887 -
Clacu07g1656 311 MobiDBLite consensus disorder prediction 203 230 - -
Clacu07g1656 311 MobiDBLite consensus disorder prediction 1 16 - -
Clacu07g1656 311 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 24 277 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Clacu07g1656 311 MobiDBLite consensus disorder prediction 168 185 - -
Clacu07g1656 311 Pfam TCP family transcription factor 60 175 IPR017887 -
Clacu07g1656 311 MobiDBLite consensus disorder prediction 289 311 - -
Clacu07g1656 311 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1656 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2549 Clacu-Chr1:35779635 Clacu07g1656 Clacu-Chr7:31184883 1.40E-24 dispersed
Clacu03g0673 Clacu-Chr3:7371430 Clacu07g1656 Clacu-Chr7:31184883 4.20E-24 dispersed
Clacu04g1231 Clacu-Chr4:26466391 Clacu07g1656 Clacu-Chr7:31184883 5.80E-31 dispersed
Clacu06g1661 Clacu-Chr6:27382718 Clacu07g1656 Clacu-Chr7:31184883 1.30E-33 dispersed
Clacu07g1656 Clacu-Chr7:31184883 Clacu11g1950 Clacu-Chr11:30481645 1.50E-19 dispersed
Clacu11g0687 Clacu-Chr11:6648135 Clacu07g1656 Clacu-Chr7:31184883 1.90E-11 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu01g0823 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.1e-68 255.0
Clacu02g1453 . 37 247 TCP Transcription Factor Family AT5G23280 59.9 5.6e-57 218.0
Clacu06g0017 . 59 341 TCP Transcription Factor Family AT2G45680 54.1 1.5e-66 250.4
Clacu05g2640 . 65 159 TCP Transcription Factor Family AT3G47620 89.7 8.4e-41 165.2
Clacu04g1303 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.6e-39 161.0
Clacu11g1530 . 148 230 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Clacu11g1530 . 148 240 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Clacu05g1532 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.1e-60 229.2
Clacu01g0823 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 8.6e-63 237.3
Clacu02g1453 . 9 247 TCP Transcription Factor Family AT5G08330 55.8 8.0e-61 230.7
Clacu11g1530 . 147 384 TCP Transcription Factor Family AT1G35560 50.4 1.4e-42 170.6
Clacu07g1656 . 43 168 TCP Transcription Factor Family AT3G02150 62.1 1.3e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006589 2 2 1 2 1 1 2 1 1 1 1 1 2 0 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48098 PF03634 TCP 1.00E-27 No_clan Clacu TF