Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1656 ATGCCTGCAGACAAACATGATGAGAGACATAATATGATTAAAAATTCTAAAGAAGAGAATTCACCACCTCCAAAACTAGCAGCAGCAGGAGGTTCATCAAGCTCATCGTTGGCGGCGGCCACGCCATGGCTTAGGTTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGGCTGCGCGACAGGCGTGTAAGGCTTTCGGTTTCAACCGCAATTCAGCTCTATGATCTTCAAGACCGGCTTGGGCTTAATCAGCCGAGCAAGGTCGTCGACTGGTTGCTGAACGCCGCCAAGGATGAAATCGACGAACTCCCTCCATTGCCAATCCCATCGGCAAGCCTTGGCCTTCACTATCAATCTATGCTACCACCAACTGTGCACCACCCGCATAGATCAGAGTTCAAAATCAACTGCATCGACAAGGCCGAGGTCAAGGACGAGACCGAATTGGAAAAGCAACAGAAATCAAATAATAATTCTAATAATCCCTCTCATCCTTCTTCCTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTTTTATTGGGATCATAATCCTCCATCATCATCGACATCATCATCAACAACAACAACAAATAATCTTCCATTTCTTACATCTCAACAACCTCAGGATAATAATAATCTTCATAACTTCAATCATCTCAATTTGTCTTTGCCTTCCCCTTTGTCTCTTGAGTTCAATCACTTGCACCAAAATTTCTTCATTAACAATAATTCTCTCAATAATACACCTCCTAATTTCCACCCCGCTGTTAGGCCTTTTCATTTTAGTATGGCTACCAAATTCCTTTCTCAAGACAAGAATAACAATAATAATGCAGATAATCCTCCAAATAAGGATCATGGCTTTGCTTCTGATGAATGA 936 43.7 MPADKHDERHNMIKNSKEENSPPPKLAAAGGSSSSSLAAATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGLHYQSMLPPTVHHPHRSEFKINCIDKAEVKDETELEKQQKSNNNSNNPSHPSSFSALLNNVSAPPFGFYWDHNPPSSSTSSSTTTTNNLPFLTSQQPQDNNNLHNFNHLNLSLPSPLSLEFNHLHQNFFINNNSLNNTPPNFHPAVRPFHFSMATKFLSQDKNNNNNADNPPNKDHGFASDE 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31184883 31186394 - ClG42_07g0165600.10 Clacu07g1656 254254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1656 311 MobiDBLite consensus disorder prediction 160 185 - -
Clacu07g1656 311 ProSiteProfiles TCP domain profile. 60 118 IPR017887 -
Clacu07g1656 311 MobiDBLite consensus disorder prediction 203 230 - -
Clacu07g1656 311 MobiDBLite consensus disorder prediction 1 16 - -
Clacu07g1656 311 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 24 277 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Clacu07g1656 311 MobiDBLite consensus disorder prediction 168 185 - -
Clacu07g1656 311 Pfam TCP family transcription factor 60 175 IPR017887 -
Clacu07g1656 311 MobiDBLite consensus disorder prediction 289 311 - -
Clacu07g1656 311 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2549 Clacu-Chr1:35779635 Clacu07g1656 Clacu-Chr7:31184883 1.40E-24 dispersed
Clacu03g0673 Clacu-Chr3:7371430 Clacu07g1656 Clacu-Chr7:31184883 4.20E-24 dispersed
Clacu04g1231 Clacu-Chr4:26466391 Clacu07g1656 Clacu-Chr7:31184883 5.80E-31 dispersed
Clacu06g1661 Clacu-Chr6:27382718 Clacu07g1656 Clacu-Chr7:31184883 1.30E-33 dispersed
Clacu07g1656 Clacu-Chr7:31184883 Clacu11g1950 Clacu-Chr11:30481645 1.50E-19 dispersed
Clacu11g0687 Clacu-Chr11:6648135 Clacu07g1656 Clacu-Chr7:31184883 1.90E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48098 PF03634 TCP 1.00E-27 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1656 - - - 0.0