Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1662 ATGAAGCTCCCGGTGGCGAGTAAAGATGGTTCTCTCTCACTTTCACTCTCACACAGCGCATCTCTCCGCCTCCAGTTGCCTTCCCGGCCGCCGCATTCACTTCATCAGTCTCTCTCATGGCGGCCTTCCATCAAACAGACCATTTCTCTCTCCAGCAGTCCGCACCAGAAGCTGGCCTCCCGAATCATGGCCATGTCAGCTAGAAATAACGACGAATCTGTGGTTGAATCTCCAGCAAAGGCGCTCCGGAGGATTCTGGAGATGCCTGGCGTCCATCAAGGTCCCGCTTGTTTCGATGCTCTCAGTGCTAAGCTAGTCGAGAGAGCTGGATTTCTCTACTGCTTTACCAGTGGATTTTCCATATCGGCTGCTAGACTAGCGTTGCCAGATACAGGTTACATATCGTATGGTGAAATGTTGGATCAAGGGCAACTAATCACTCAATCAGTGTCAATTCCTGTCATTGGGGATGGCGATAATGGATATGGCAATGCAATGAATGTGAAGAGGACTGTTAAGGGATATATTCGAGCAGGCTTTGCGGGGATCATATTAGAAGATCAGGTATCTCCAAAAGCTTGTGGCCATACACAAGGTAGGAAAGTGGTATCAAGAGAGGAGGCTGTGTTGCGGATAAAAGCAGCTGTTGATGCTAGAAAAGAAAGCGGTTCTGACATTGTCATTGTAGCTAGAACTGATTCTCGTCAAGCAGTGTCCCTTAGTGAATCACTGCGGAGAGTTAGGGCCTTTGCAGATGCTGGAGCTGATGTTCTTTTCATTGACGCACTAGCTTCAAAAGATGAGATGGAGGCCTTCTGTAAAATCTCACCGAAAATACCTAAAATGGCCAATATGCTTGAAGGAGGAGGAAAGACACCCATTCTTAATCCTCTTGAACTGGAGGAAATTGGATTTAAACTTGTTGCTTACCCTCTTTCCTTGGTTGGTGTATCAATTCGAGCAATGCAGGATGCACTGCTTGCAATTAAAGGAGGTCGATTGCCTTCTCCTGGAACCTTGCCAACTTTTGGAGAGATGAAGGAAATATTGGGTTTCAACTCTTATTACGAAGAAGAGAGGAAATATGCTTCTGCTGTTAGCCAGCCTTCAATTAAAGTGGGCAGTAGCATAAATAGTCTTCAACGGAGGGTTGAAGATGATTCGGAGAAGAAAGACCAAAATCGTCAAGGTCCAGTTGTCGAAGTGATTACTCCTGAGATATACAGAAGCTACGATGGAGATGGATCAAAAGATCCCTTCTCTGGTATCTGGTCCCGGAGACTGAGAGTCAAAATAACCGGAAGAGATGGATTTGAGAGACTTGACGTTAGGATTCCTGCGGGGTTCTTGGAAGGACTAACAAACATAGTTCCGGCTTTGGGAGGTATAAATATCAAAGAACTGATGGACGATGCAGCTGGAGAAGTGGGAGGGAAACTGTTGCTGGATTTTGTTGATGGCATGGGTGACCGAATTGAAGTCTTTCTGGAGTAA 1494 46.18 MKLPVASKDGSLSLSLSHSASLRLQLPSRPPHSLHQSLSWRPSIKQTISLSSSPHQKLASRIMAMSARNNDESVVESPAKALRRILEMPGVHQGPACFDALSAKLVERAGFLYCFTSGFSISAARLALPDTGYISYGEMLDQGQLITQSVSIPVIGDGDNGYGNAMNVKRTVKGYIRAGFAGIILEDQVSPKACGHTQGRKVVSREEAVLRIKAAVDARKESGSDIVIVARTDSRQAVSLSESLRRVRAFADAGADVLFIDALASKDEMEAFCKISPKIPKMANMLEGGGKTPILNPLELEEIGFKLVAYPLSLVGVSIRAMQDALLAIKGGRLPSPGTLPTFGEMKEILGFNSYYEEERKYASAVSQPSIKVGSSINSLQRRVEDDSEKKDQNRQGPVVEVITPEIYRSYDGDGSKDPFSGIWSRRLRVKITGRDGFERLDVRIPAGFLEGLTNIVPALGGINIKELMDDAAGEVGGKLLLDFVDGMGDRIEVFLE 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31247655 31256215 + ClG42_07g0166200.10 Clacu07g1662 254260

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1662 497 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 70 488 - -
Clacu07g1662 497 MobiDBLite consensus disorder prediction 377 396 - -
Clacu07g1662 497 CDD ICL_PEPM 82 328 IPR039556 GO:0003824(InterPro)
Clacu07g1662 497 Gene3D - 80 368 IPR040442 -
Clacu07g1662 497 Pfam Phosphoenolpyruvate phosphomutase 95 329 - -
Clacu07g1662 497 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 73 364 IPR015813 GO:0003824(InterPro)
Clacu07g1662 497 MobiDBLite consensus disorder prediction 382 396 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1662 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1119 . . . . . . . . . . . Cma14g01497 . Car14g01329 . . Cpe03g01257 Bhi01g02631 Tan10g1238 . . . . Lcy11g1233 . . . . . . . . . . Cone11ag0627 . . . Cme07g01856 . Blo07g00101 Bda11g00470 . . Bpe13g00728 . . . . Cmo14g01532 . . . . . . . . . . . . . Cla07g01581 Cam07g1678 Cec07g1773 Cco07g1736 Clacu07g1662 Cmu07g1628 Cre07g2002 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004913 1 4 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 2 1 2 1 2 4 2 1 41