Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1663 ATGCATCCCATGCAGGATGTGGGCACACGTAGGCCTTTAAAAGGGGGCCGACCTGGTCCAAAGCCAATTCAGCATGCTCGACCGAGATGGGCTAGCCGGCTTGTTGCGCTCTTCAAACAAAGTCCAGAACCTTCTTCTTCTGATCTGTCAGATCGGGCTTTTGGTTTCAACCACACTTATCGTAGTCGATTCAATCAGATCTACTTCACCCTTCTTACTGCTGATTTTTGTGCTACAATTTCTGGGCTTAATGCAAGGGCATTGGCCAGAGACAGGGTTGAGAGTCTTATCTTGTTAGGTGGGATGTTGTTTCCAAGTGGTGCAACTGCAATGTGGCTAGGTTGGGTTGGGATGAAGAAGGCCTTTGATCAAACTGTTAGAGACTTGAAAAGAGAGGTCAATAAGACCGTGCTCAAAATCCCTAAAATTGAGCAGAAGGTTTTGGATGCCACTAGCAATGAGCCTTGGGGTCCTCATGGATCCCTTCTTGCAGATATAGCACAGGCAACTAGAAATTATCATGAATATCAAATGATCATGGGAATACTCTGGAAGCGGATTAATGATACCGGAAAGAATTGGAGGCATGTCTACAAGGGTTTGACCGTTTTGGAGTACTTGGTGGGTCATGGGTCAGAGCGTGTCATAGATGACATCAGAGAACATGCATATCAGATATCAACCTTATCTGATTTTCAATACATCGACTCCAATGGGAGGGACCAAGGTAACAATGTTAGAAAGAAATCTCAAAATCTTGTTGCCCTTGTAAATGATAAAGAAAGGATCATTGAGGTCAGACAGAAGGCTGCTGCTAACAGGGACAAGTTTCGCAGCCCATCATCTATGGGCAGTATGTATAGACCAAGTTCAGGAGGATATGATGACCGCTATGAAGGACGATATGGAAGCCGTGATGGAGACAGAAATGTTGATTCTTATGGGAGGGAAAGAGATTATGGTTTTAGAGATGATCGTTCTGGCAGAAATGAGGATTCATATGGTCGTGATTATGAAGAACGCTATAACAGAGATGGTTTTAAGGATGATGATTATCGAGGAAGAAGCCGAAGCATTGATGACTATCAGTATGGTTCAAGGAGCAGGAGCTCTGACAGAGATGGAGAACGTACATTTGATGATGATGGTCAAGCTTCTTCTCGCAACAATGGTGCCAGAGCTGACGAGCAAGCTCAGGATGGAAGGCAGCTTGAACGTAAATTTTCAGAACAGAATATTGGTGCTCTGCCAAGTTATGAAGAAGCTGTGAATGAATCTGGAAGCACTGGGCATAGTCAAAGAGATGTAGAAGCTCCAGCAACTACTGCTCCAAGAACTTTTCCTCCGCCCACGCCCAGTACTCCAAGCCAGCTAACTACTCATGCAACCACCGCATCCCCGCCTACCCAGGGACATGATGGTTCTGATGAATTTGACCCCCGTGGTTCAGTTCCAGTTCCAGCTGCTCCAAATGCCTCGAGTAGTTTGGAGACAAATTTATTTGACTCCTTGGCCTTAGTGCCTGTTGGGCCAGTAACATCCAGTGCAGACTCTGAGTGTCATGTTCAGACAAACTCTGCTGTGGGATCCTATACTCAAACTCAGACTTTTGAAGACCCATTTGGTGACTCCCCTTTTAAAGCCATTTCTTCCTCTGGAGTCCAAGATCAAGCACATTTTCACCGTGGGGAATCATTTTCTGCAGCAACTTACTCCACACCAGACATCCCTGTTCAACCTCAACCGAATTTGCATCACCCTCGTGAAGAAACTCTGCAACATCACAATATTGGTGTACTGGCTGATCTCCTTCCTCCTGAAACTTTACCAGCTGCTGTTTCACAGCCCACATTTACAATATCAAACCAACCAGCACAGCCAAATTTTCAAGCTGCATCTGGCCTGCCTGCACAACCAAATTCTAACTTGGGGAATTATCAGCAAGAGGGAAATACTGGTCCTGTGAATTTTCAAAATCAAACAGAACCAGGGAGAGAGTTCGGCAACGGGATGTCCGTGGCACAGGGAGGAGTACCAGCTCATGTCAATTCATATATGGCTCCTCCAAGTGCTGGACCTAATACCCAGCCCAACAATTTTGGAACAACTCATAATGGTTCTGCAGCTCCCACGAGTTCTCATGTCACACTTCAAACTACAAGACCGCCTGCTCAGCTTGCTAGTGGAAACTTCAATCCGCCACACGGTTCAGTAGCTTCTCAAGTATCTTACCAAGCCTCAAATTTTCCTGTTGTAAAATCCAACGTTGAGGTTATGGGTAGTTTTAATCCTCAGGCAGGAAACTACACAATGACTTCCCAGCAAATTCCTCCAGCCGGATCACTTTCAACTGCATCTCAAGCTTCAAAGAATAAGTTTGAAACCAAGTCCACAGTATGGTCTGACACATTAAGCAGAGGGCTAGTCAATTTAAACATATCTGGACCTAAAGCAAACCCAATGGCGGACATCGGTGTTGATTTTGAAGCCCTCAATAGGAAGGAGAAGAGGATGGAGAAGCCTAGTACAGCTCCAGTGATATCTACCATTAACATGGGTAAAGCTATGGGATCTGGTTCTGGGATAGGCCGAGCCGGTGCTAGTGCACTAAGGCCACCTCCAAATGCAATGTCAGGTTCCGGTTCCGGTTCGGGCATGGGAATGGGCATGGGCATGGGCATGAACCCCAATCTTGGCATGGGCATGGGCATGAGAGGCTATGGAGGTATGAATCAACCCATGGGTGGCATGGGGATGAATATGGGCATGGGGCAACAAGGAATCCCAATGCAGCAACCTCGAGCGAACATGCCCGGTGTATACAACCCGATGATGGGTGCTGGTGGTTATGCTCCTCAACAGCCACCATACGGCAGTTACCGATGA 2886 46.5 MHPMQDVGTRRPLKGGRPGPKPIQHARPRWASRLVALFKQSPEPSSSDLSDRAFGFNHTYRSRFNQIYFTLLTADFCATISGLNARALARDRVESLILLGGMLFPSGATAMWLGWVGMKKAFDQTVRDLKREVNKTVLKIPKIEQKVLDATSNEPWGPHGSLLADIAQATRNYHEYQMIMGILWKRINDTGKNWRHVYKGLTVLEYLVGHGSERVIDDIREHAYQISTLSDFQYIDSNGRDQGNNVRKKSQNLVALVNDKERIIEVRQKAAANRDKFRSPSSMGSMYRPSSGGYDDRYEGRYGSRDGDRNVDSYGRERDYGFRDDRSGRNEDSYGRDYEERYNRDGFKDDDYRGRSRSIDDYQYGSRSRSSDRDGERTFDDDGQASSRNNGARADEQAQDGRQLERKFSEQNIGALPSYEEAVNESGSTGHSQRDVEAPATTAPRTFPPPTPSTPSQLTTHATTASPPTQGHDGSDEFDPRGSVPVPAAPNASSSLETNLFDSLALVPVGPVTSSADSECHVQTNSAVGSYTQTQTFEDPFGDSPFKAISSSGVQDQAHFHRGESFSAATYSTPDIPVQPQPNLHHPREETLQHHNIGVLADLLPPETLPAAVSQPTFTISNQPAQPNFQAASGLPAQPNSNLGNYQQEGNTGPVNFQNQTEPGREFGNGMSVAQGGVPAHVNSYMAPPSAGPNTQPNNFGTTHNGSAAPTSSHVTLQTTRPPAQLASGNFNPPHGSVASQVSYQASNFPVVKSNVEVMGSFNPQAGNYTMTSQQIPPAGSLSTASQASKNKFETKSTVWSDTLSRGLVNLNISGPKANPMADIGVDFEALNRKEKRMEKPSTAPVISTINMGKAMGSGSGIGRAGASALRPPPNAMSGSGSGSGMGMGMGMGMNPNLGMGMGMRGYGGMNQPMGGMGMNMGMGQQGIPMQQPRANMPGVYNPMMGAGGYAPQQPPYGSYR 961
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31261304 31272655 - ClG42_07g0166300.10 Clacu07g1663 254261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1663 961 Gene3D - 140 279 IPR008942 -
Clacu07g1663 961 CDD ENTH 143 259 - -
Clacu07g1663 961 ProSiteProfiles ENTH domain profile. 135 267 IPR013809 -
Clacu07g1663 961 MobiDBLite consensus disorder prediction 269 404 - -
Clacu07g1663 961 Pfam ENTH domain 142 263 IPR013809 -
Clacu07g1663 961 SMART enth_2 141 267 IPR013809 -
Clacu07g1663 961 PANTHER EPSIN/ENT-RELATED 118 896 - GO:0005543(PANTHER)|GO:0005768(PANTHER)|GO:0005886(PANTHER)|GO:0006897(PANTHER)|GO:0030125(PANTHER)|GO:0030276(PANTHER)
Clacu07g1663 961 MobiDBLite consensus disorder prediction 294 383 - -
Clacu07g1663 961 MobiDBLite consensus disorder prediction 619 714 - -
Clacu07g1663 961 FunFam Clathrin interactor 1 133 280 - -
Clacu07g1663 961 SUPERFAMILY ENTH/VHS domain 140 279 IPR008942 -
Clacu07g1663 961 MobiDBLite consensus disorder prediction 619 666 - -
Clacu07g1663 961 MobiDBLite consensus disorder prediction 421 493 - -
Clacu07g1663 961 MobiDBLite consensus disorder prediction 456 471 - -
Clacu07g1663 961 MobiDBLite consensus disorder prediction 422 436 - -
Clacu07g1663 961 MobiDBLite consensus disorder prediction 1 25 - -
Clacu07g1663 961 MobiDBLite consensus disorder prediction 688 714 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1663 K12471 - - csv:101208671 1369.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1663 Clacu-Chr7:31261304 Clacu08g0574 Clacu-Chr8:12475818 3.70E-133 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1118 . . . . . . . . . . . Cma14g01498 . Car14g01330 . . Cpe03g01258 Bhi01g02630 . . . Hepe05g1275 . . . . . . . . . . . . . . . . Cme07g01854 . . . . . . . . . . Cmo14g01533 . . . . . . . . . . . . . Cla07g01582 Cam07g1679 Cec07g1774 Cco07g1737 Clacu07g1663 Cmu07g1629 Cre07g2003 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003028 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 12 1 2 53