Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1674 ATGGCCTCCGCCCACGGCGGCGCCGGTCTCACTCGGTACGGTTCCGCGCCTGGATCTCTCCTGACCACGGCGGTCGATTCCGTGATTGGAAGTCGGCAACCGGACTCCGCCGCCACGCTCCGGGGGCCGCCGTCGTTCGGCGGCCACTACTTCTCCTCCGCCGATTCCTCCGTCGTGGAGTCGTCAAGGAAGGTAGTTCAGTCGTCGTCTACTTCCAACGATCTGAAATCATCGTCGTCCACCGCCGCCGCCTTGCATAGGTCATACGGAATCAACGATTTGGCGTTAGGGGATTTCTCGACGGGTAGAAATTTCAATAGCAATGGTGGTCAATCCTCTTCCTCTTCGCCGTTGGTTCGCCAGAGAAGCTCGCCGGCTGGATTTCTCGGCCATCTCTCCGTTGCCGAACCAAACGGAGGGTTTTCATTGACAATAGGAGGTGGTGGAAATGGAGTAGGAAGACTAAAGTCTCAAATGAGCTTCAGTGGGCAGGATAATTCACTTTCCCAAATCTCTGAAATGAGTGAAAGTTTTGTGGAGGCAGCCAATTCCTCAAGCAATGGCCTTCAAAGCAACACCAATTCCACACATTCTTTTGGCCCCTCTGCCTTTGCTATGGACTCTTCATGGGACACCTCCAATAATTCCATTGTCTTTGGTGGCCCTCATGCTAAAAGATCCAAGCACCATTCCGATGCCGACTTCTTCACTGGCCTCGAGTCTCAATTTAGCCTGCCACAAACAACTCTAGAAATGGCAGCTGTGGAGAGGTTGCTTCAAATTCCTGAAGATGCTGTTCCTTGTAAGATTCGAGCCAAGCGTGGCTGTGCTACTCACCCTCGGAGTATTGCCGAACGGGAGAGAAGAACTAGAATCAGTGGAAAATTGAAGAAACTTCAAGAGCTTGTTCCCAACATGGATAAGCAAACAAGCTATTCAGACATGTTGGACTTGGCAGTGCAGCATATCAAAGGTCTTCAAAATCAAATTCAGAAGCTTAACAAAGAAGTTGAGAATTGCACCTGTGGAAGCAAAGAATGCTTATAA 1047 50.62 MASAHGGAGLTRYGSAPGSLLTTAVDSVIGSRQPDSAATLRGPPSFGGHYFSSADSSVVESSRKVVQSSSTSNDLKSSSSTAAALHRSYGINDLALGDFSTGRNFNSNGGQSSSSSPLVRQRSSPAGFLGHLSVAEPNGGFSLTIGGGGNGVGRLKSQMSFSGQDNSLSQISEMSESFVEAANSSSNGLQSNTNSTHSFGPSAFAMDSSWDTSNNSIVFGGPHAKRSKHHSDADFFTGLESQFSLPQTTLEMAAVERLLQIPEDAVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYSDMLDLAVQHIKGLQNQIQKLNKEVENCTCGSKECL 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31457004 31464048 - ClG42_07g0167400.10 Clacu07g1674 254272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1674 348 SMART finulus 282 332 IPR011598 GO:0046983(InterPro)
Clacu07g1674 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 276 326 IPR011598 GO:0046983(InterPro)
Clacu07g1674 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 279 340 IPR036638 GO:0046983(InterPro)
Clacu07g1674 348 CDD bHLH_AtbHLH_like 281 333 IPR045239 -
Clacu07g1674 348 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 76 335 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Clacu07g1674 348 Pfam Helix-loop-helix DNA-binding domain 282 327 IPR011598 GO:0046983(InterPro)
Clacu07g1674 348 Gene3D - 277 345 IPR036638 GO:0046983(InterPro)
Clacu07g1674 348 Coils Coil 316 343 - -
Clacu07g1674 348 FunFam Transcription factor bHLH130 family 277 345 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1674 Clacu-Chr7:31457004 Clacu08g0643 Clacu-Chr8:15077993 3.90E-08 dispersed
Clacu03g1379 Clacu-Chr3:26683707 Clacu07g1674 Clacu-Chr7:31457004 3.80E-31 transposed
Clacu08g0042 Clacu-Chr8:998462 Clacu07g1674 Clacu-Chr7:31457004 4.30E-25 transposed
Clacu09g0432 Clacu-Chr9:3784615 Clacu07g1674 Clacu-Chr7:31457004 4.70E-32 transposed
Clacu10g1715 Clacu-Chr10:30668859 Clacu07g1674 Clacu-Chr7:31457004 2.10E-36 transposed
Clacu03g1677 Clacu-Chr3:30539993 Clacu07g1674 Clacu-Chr7:31457004 1.00E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48100 PF00010 HLH 9.10E-09 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1674 - - - 0.0