Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1680 ATGGCTGATTCCCGAGCTCTTCCTCTTCGTTGCGGAGCAGGTATCGTCAAAAGTATCCGCTTAGAGAACTTCATGTGTCACAGCAACTTGTATATTGAATTTGGCGAGTGGCTCAATTTCATTACTGGGCAGAACGGAAGTGGTAAGAGCGCTATACTGACTGCTTTATGTGTGGCATTCGGCTGTCGAGCTAAAGGAACCCAAAGGGCATCGACGTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATCAATGTTGTATTGCAAAATACTGGGGAGGATGCTTTCAAGCATGGAATATATGGTGATGTTATAATCATAGAAAGAAGGATATCCGAAGCCACCAGTGCTATTGTTTTGAAGGATTCTCATGGGAAAAAAGTTGCCAGTCGGAGGGATGAACTACGAGAGCTAGTAGAACATTTTAATATAGATGTTGAGAATCCATGTGTAATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGGAACGACAAAGACAAATTTAAGTTCTTCTTCAAGGCAACTCTTCTTCAGCAAGTGGACGATTTACTGAAAAACATTTTTGATCAATTGAGATCTGCAAATGCGCTTGTTGATGACTTGGAGTCTACCATACGACCTGTAGAGAAGGAACTAAATGAGCTGCGAGGAAAAATTAAAAACATGGAGCATGTAGAAGAAATCTCTCAACAAGTCCAGCAATTAAAGAAAAAGCTTGCTTGGTCATGGGTATATGATGTAGACAAGCAGCTTCAGGAGCAAAGTGCAAAAATAGGAAAGCTCCAAGATCGCATTCCTATTTGTCGAGCAAAAATCGATCATCAACTGGGTCTGGCAGAAAAATTAAGAGAACGCTTTATTGAGAAAAAGACTCAAATTGCAAGCATGATGGAGAGAACTTCAGAAGTGAGAAGAATGAAGGATGAACTGCAGGGAACTCTTTCCTTGGCAACAAGAGAGAAGCTTGGACTTGAAGAGGAGCATGGCCGTAAAATAAACTACATCCAAAAGATGGCAAAGCGTGTTAGGCTGCTTGAGCAACAAGTTCAAGATATTCATGAGCAGCACATAAGAAATACACAGGCCGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCGAATCGGAGACTGAAGATGCTAAGTCAACAGTCATGAGGTTGAAAGAGGAGGAAAATGCCTTAATGGAAAGTCTATACAGTGGGAGAAATGAAATAAAAAAGATTGCTGAAGAGATTGAAAGTTATGAGAAAAAGCATTATGAATTTTCTCACTCAATTCGAGAGCTAAGGCAGCATCAAACCAACAAGGTCACAGCTTTTGGAGGTGATAGAGTCATTCAATTATTACGTGCAATTGAGAGACAACATCAAAGATTCAAGAAACCTCCCATTGGTCCAATTGGTTCCCATCTGAATTTGGTCAATGGTGACATGTGGGCTCCTGCTGTTGAAAGTGCCATTGGAAGGTTGCTCAATGCTTTCATTGTGACGGATCACCAAGATTCTCTTCTTTTGAGAAGATGTGCAAATGAAGCTAATTATAGGCAACTCCCAATTATCATCTATGACTTTTCAAGACCGGTGTTAAATATTCCAGATCACATGCTTCCTCAAACAAAGCACCCTACAACCCTTTCAGTCATTCATTCTGAAAACCACACTGTCATCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTTGTTAAAGATTATGATGTGGGTAAATCAGTCGCATTTGACCAACGTATATCAAATCTCAAGGAGGTCTTTACATTAGATGGATACAAAATATATGCATTATCTTCCAGTTCCAAAAAGGAGGAGAATCTCTTTTACCAGCTGAATCCCATTTTGCCTAAAAATCTCTTCAGGTTTTCTCGAGGTTCCGTCCAGACAATTCTTCCCCCAGTTAGAAGACCCAGAAGTGGCAGACTTTGTAGTTCCTTTGAAGACCAAATTAAAAGTCTTGAAAGAGATGCATTTAATGTAAAGCAAGAAGCTGAACAATGTAGGAAGAGGAAGAGAGTTTCAGAAGAACAACTCCGGGATCTTGAAGACAACCTAAGCAATGCAAAGAGGAAGTGTCGGAGTGCAGAACGGTTTTTAATGTCCAAAAATTTGGAGCTGCAAGATTTACGGAAGTCACAAGTTGCTGAGACTAGTTCATTGCCTTCATCAAATGTGGACGAGCTTCATCAAGAAATTTCTAAAATCGAAGAGGAGATACAAGAGAATAATTTGCTTTTGGAAAAGTTTAAAATTAGGATGAAAGAAGCGGAAGCCAAGGCAAAAGATCTTAAAGTATCATTTGAGAATCTCTGTGAGTCAGCGAAAGGAGAAATTGATGCATTTGAAGAAGCTGAGAGAGATATGTTGCAGATTGAACGAGAGCTGCATTCTGCAGAAAAGGAGAAGGATCATTATGAAGGTATTATGACTAACAAGGTACTTTTTGATATTAAAGAGGCAGAGAGACAATATCAGGAGCTTGAGCGCCATCGTAAGGAGAGCTACAGTAAGGCTTCAATAATATGTCCTGAGAGTGAAATTGAGGCTTTGGGTGATTGGGATGGGAGCACACCTGAACAACTGAGTGCACAATTAACAAGGCTAAATCAGAGACTGAATAATGAGACTCGACGATGTTCTGAATCTTTGGAAGACTTGAGGATGATGTATGAGAAAAAGGAGCGTACAATCATAAGAAAACAACAGACTTATAAAAGTTTTAGGGAGAAGTTGGATGCTTGCCAGAAAGCTCTTGAGCTACGGTGGAATAAGTTTGAAAGGAATGCTAGTCTTTTGAAGCGCCAATTGACTTGGCAATTTAATGGCCATTTAAGAAAAAAGGGGATCAGCGGACATATAAAAGTTAATTACGAGGAAAAGACCCTCTCAGTTGAGGTGAAGATGCCCCAAGATGCATCCAGCAGTTCTGTTCGTGATACCCGTGGACTTTCAGGTGGAGAACGGTCATTTTCAACTCTATGCTTTGCATTGGCATTACACGAAATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTCGATGTGTTTATGGATGCAGTAAGCCGGAAAATTAGCTTAGACACTCTTGTGGATTTTGCATTGGCACAAGGCTCCCAATGGATATTTATCACACCTCATGACATCGGCATAGTAAAACAAGGAGAACGAATCAAGAAGCAGCAAATGGCAGCTCCTCGATCATGA 3240 40.4 MADSRALPLRCGAGIVKSIRLENFMCHSNLYIEFGEWLNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCSHAVINVVLQNTGEDAFKHGIYGDVIIIERRISEATSAIVLKDSHGKKVASRRDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVDDLLKNIFDQLRSANALVDDLESTIRPVEKELNELRGKIKNMEHVEEISQQVQQLKKKLAWSWVYDVDKQLQEQSAKIGKLQDRIPICRAKIDHQLGLAEKLRERFIEKKTQIASMMERTSEVRRMKDELQGTLSLATREKLGLEEEHGRKINYIQKMAKRVRLLEQQVQDIHEQHIRNTQAEESEIEEKLKELESETEDAKSTVMRLKEEENALMESLYSGRNEIKKIAEEIESYEKKHYEFSHSIRELRQHQTNKVTAFGGDRVIQLLRAIERQHQRFKKPPIGPIGSHLNLVNGDMWAPAVESAIGRLLNAFIVTDHQDSLLLRRCANEANYRQLPIIIYDFSRPVLNIPDHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQRISNLKEVFTLDGYKIYALSSSSKKEENLFYQLNPILPKNLFRFSRGSVQTILPPVRRPRSGRLCSSFEDQIKSLERDAFNVKQEAEQCRKRKRVSEEQLRDLEDNLSNAKRKCRSAERFLMSKNLELQDLRKSQVAETSSLPSSNVDELHQEISKIEEEIQENNLLLEKFKIRMKEAEAKAKDLKVSFENLCESAKGEIDAFEEAERDMLQIERELHSAEKEKDHYEGIMTNKVLFDIKEAERQYQELERHRKESYSKASIICPESEIEALGDWDGSTPEQLSAQLTRLNQRLNNETRRCSESLEDLRMMYEKKERTIIRKQQTYKSFREKLDACQKALELRWNKFERNASLLKRQLTWQFNGHLRKKGISGHIKVNYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHDIGIVKQGERIKKQQMAAPRS 1079
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31543513 31556393 - ClG42_07g0168000.10 Clacu07g1680 254278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1680 1079 Coils Coil 362 396 - -
Clacu07g1680 1079 Coils Coil 189 223 - -
Clacu07g1680 1079 Coils Coil 312 332 - -
Clacu07g1680 1079 Coils Coil 340 360 - -
Clacu07g1680 1079 Coils Coil 737 820 - -
Clacu07g1680 1079 Coils Coil 822 849 - -
Clacu07g1680 1079 Gene3D - 856 1074 IPR027417 -
Clacu07g1680 1079 SUPERFAMILY Smc hinge domain 423 604 IPR036277 GO:0005515(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0051276(InterPro)
Clacu07g1680 1079 Gene3D - 15 272 IPR027417 -
Clacu07g1680 1079 Coils Coil 655 710 - -
Clacu07g1680 1079 Coils Coil 284 304 - -
Clacu07g1680 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 1069 IPR027417 -
Clacu07g1680 1079 Coils Coil 877 915 - -
Clacu07g1680 1079 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 12 1077 - GO:0000724(PANTHER)|GO:0003684(PANTHER)|GO:0003697(PANTHER)|GO:0005634(PANTHER)|GO:0030915(PANTHER)|GO:0035861(PANTHER)
Clacu07g1680 1079 Pfam RecF/RecN/SMC N terminal domain 16 1069 IPR003395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1680 K22804 - - csv:101208493 1925.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1680 Clacu-Chr7:31543513 Clacu09g0440 Clacu-Chr9:3823559 6.90E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g371 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla07g01603 Cam07g1696 Cec07g1792 Cco07g1756 Clacu07g1680 Cmu07g1646 Cre07g2019 . . Chy07g01391 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu09g0440 . 4 1044 Structural Maintenance of Chromosomes family AT5G15920 69.1 0.0e+00 1393.3
Clacu07g1680 . 13 1079 Structural Maintenance of Chromosomes family AT5G07660 61.8 0.0e+00 1233.8
Clacu07g1680 . 10 1079 Structural Maintenance of Chromosomes family AT5G61460 64.9 0.0e+00 1310.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010088 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 32