Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu07g1691 | ATGACCCAGTTGCTGAATCTAGCTCTTGGAGTGGTTTTAGTTGCAGTTTTGGTGATTTTCCTTCTCATCTTCTTGAACAGAAGGGGAAAGGGGAAGGATAATGATGAATACAATGACATAGAGAGAAAACAGGAGAGGGAGAAAGCGGAGGAAGAGAAAGAAGAATTGGTGAGTTTTCAAGGTGGACAGGACCTTACCATTGTGGATATTTTGGAAGCTCCTGGGGAAGTAATTGGGAAAGCCAACCATGGAACTTTGTATAAGGCTTATTTGCAAGGAAGCAACACAGTAAGGCTGCTAAGGTTTCTGAGGCCAGTTTGCACTGCTGGTCTTGAAGACTTTGTCAGTGAAATTGAGTTTTTAGGTTCCATAAGACACCCAAATTTGGTGCCTCTCTTGGGATTCTACTCAGGTCCAAGAGCGGAGAAGCTTCTCATTCATCCATTTTACAGGCGAGGAAATCTAGCTCAGTTCATTAGAGATGGGAATGGCGACTCACACCGATGGGGAGTTATAAACAAGATCTCGATTGGTATTGCGAAAGGATTGGATCATCTTCACACTGGCCTGCAAAAGCCAACAATCCATGGGAATCTTCAATCGAAAAATGTTCTTTTGGATAGGTATTATGAACCGTATGTCTCCGATTTCGGCCTACATCTACTGCTGAATTCCCCATCTGCCCAAGAGGTAGTTGAAGCTTCAGCAGCCAATGGCTACAAAGCTCCTGAGCTGATCAAGATGAAGGATGCAACTGAGGAGACTGACATCTATAGTTATGGGGTGATATTACTCGAGTTACTTTCGGGGAAGGAACCGATCAACGAAAAGCCAAATCCTGATGAGGATTTTTACTTGCCTAACTTTATGAGAAATGCTGTTCTTGGACATAGAATTGCAGATTTGTTCCATCCAGAAATACTTCTGTATAGCAGTATTGATGGAAATCATGTTACTGAAGAAAAGATTCTCAAATTCTTTCAGCTTGCTATGGCTTGTTGTTCTCCTTCTCCTGCTCTTAGACCTAGTATGAAGCAAGTGCTACGGAAGCTCAATGAAATCGGAACGTAG | 1071 | 42.67 | MTQLLNLALGVVLVAVLVIFLLIFLNRRGKGKDNDEYNDIERKQEREKAEEEKEELVSFQGGQDLTIVDILEAPGEVIGKANHGTLYKAYLQGSNTVRLLRFLRPVCTAGLEDFVSEIEFLGSIRHPNLVPLLGFYSGPRAEKLLIHPFYRRGNLAQFIRDGNGDSHRWGVINKISIGIAKGLDHLHTGLQKPTIHGNLQSKNVLLDRYYEPYVSDFGLHLLLNSPSAQEVVEASAANGYKAPELIKMKDATEETDIYSYGVILLELLSGKEPINEKPNPDEDFYLPNFMRNAVLGHRIADLFHPEILLYSSIDGNHVTEEKILKFFQLAMACCSPSPALRPSMKQVLRKLNEIGT | 356 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 31652740 | 31654011 | - | ClG42_07g0169100.10 | Clacu07g1691 | 254289 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu07g1691 | 356 | Coils | Coil | 34 | 54 | - | - | |
| Clacu07g1691 | 356 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED | 7 | 355 | IPR052451 | - | |
| Clacu07g1691 | 356 | SUPERFAMILY | Protein kinase-like (PK-like) | 75 | 351 | IPR011009 | - | |
| Clacu07g1691 | 356 | Gene3D | Transferase(Phosphotransferase) domain 1 | 151 | 356 | - | - | |
| Clacu07g1691 | 356 | Gene3D | Phosphorylase Kinase; domain 1 | 38 | 149 | - | - | |
| Clacu07g1691 | 356 | ProSiteProfiles | Protein kinase domain profile. | 72 | 356 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Clacu07g1691 | 356 | Pfam | Protein tyrosine and serine/threonine kinase | 76 | 351 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu07g1691 | Clacu-Chr7:31652740 | Clacu04g0680 | Clacu-Chr4:20751540 | 3.80E-51 | dispersed | |
| Clacu09g0913 | Clacu-Chr9:8505839 | Clacu07g1691 | Clacu-Chr7:31652740 | 3.70E-58 | transposed | |
| Clacu01g0474 | Clacu-Chr1:4717443 | Clacu07g1691 | Clacu-Chr7:31652740 | 4.10E-84 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 73728 | PF07714 | PK_Tyr_Ser-Thr | 9.10E-31 | CL0016 | Clacu | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu07g1691 | - | - | - | 0.0 |