Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1701 ATGTTCCAAGGGTTTGTTTTCGGCATTAATGACGTGTACGGCCACGAATTCTCCGCCATGTCTCTGCCGGAATTCACTAACAGCCAGTCAACGGAACAAATCGACGACACGGCGGTGTTCAGCTCCGACGAGTTTCGAATGTACTCGTACAAGATCCAACGGTGTCCAAGAAACCGCAGCCACGATTGGACGGAATGTCCGTACGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAACTACACTGCTGTCGCCTGCCCGGCTTTCCGGTCGGGCAGCTGCCCCAAGGGAGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTACTGGCTTCACCCGGCCCGTTACCGGACCCGGGCTTGTAATGCTGGCCGGTTTTGCCAACGGAAAGTTTGTTTTTTCGCTCACTCGCCGGAGGAGCTCCGGCCAGATACCAAACAGAAATTTAATCTTAATGCTCACCGGCTGCGTGTGGCGGTCTCCACCGTTGAATGTCTGCCGGAGGAAAAAATTGACGGCGTTTCGGAAATTCCGGTGAGGGAGAACGGCGGCGGACGGGGAAATCGGAGTTTTGGGTTGGAGGTGTCGGAGTTGGACTCGCCGCATATTGACTGGATATCGGAATTGTTGCAGTAA 648 55.25 MFQGFVFGINDVYGHEFSAMSLPEFTNSQSTEQIDDTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPDTKQKFNLNAHRLRVAVSTVECLPEEKIDGVSEIPVRENGGGRGNRSFGLEVSELDSPHIDWISELLQ 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31784821 31785468 - ClG42_07g0170100.10 Clacu07g1701 254299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1701 215 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872(InterPro)
Clacu07g1701 215 PANTHER UNKEMPT FAMILY MEMBER 34 149 IPR045234 -
Clacu07g1701 215 SUPERFAMILY CCCH zinc finger 83 114 IPR036855 GO:0046872(InterPro)
Clacu07g1701 215 Gene3D - 81 154 - -
Clacu07g1701 215 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 109 IPR000571 GO:0046872(InterPro)
Clacu07g1701 215 SMART c3hfinal6 84 110 IPR000571 GO:0046872(InterPro)
Clacu07g1701 215 SMART c3hfinal6 119 142 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1701 Clacu-Chr7:31784821 Clacu11g0335 Clacu-Chr11:3007710 3.80E-46 dispersed
Clacu03g1629 Clacu-Chr3:29942078 Clacu07g1701 Clacu-Chr7:31784821 5.80E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48104 PF00642 zf-CCCH 1.20E-05 CL0537 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1701 - - - 0.0