Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1728 ATGATGTTAGTTAGGATGGGAGAACTCTATCTTACAATTCTAATACTGGCTTGCCTTCATTATCTTGCACTGTCTGATTTTCAAGGTGATGCACTCTTTGCATTGAAGAATACATTGAATGCAACAGCAAATCAGCTCACAGATTGGAACCCAAATCAAGTCAATCCATGTACTTGGTCCAATGTTATATGTAGTGGAAGCAATGTGATCTCTGTATCCTTGTCCACAATGGGATTTACTGGAACCTTGTCTCCACGAATTGGACTTCTAAAATCACTTTCAACCCTGATTTTGCAGGGAAATTACATAACTGGAGAGATACCTAAGGATTTTGGAAACCTGACAAATTTGGTTAGTTTGGATTTGGGAAATAACAGCCTAACTGGCCAAATACCATCGTCCCTTGGTAACCTTAAGAAACTACAGTTCCTAACTCTGAGTCAAAATCGTCTAACGGGGACTATTCCGGAGTCACTTTCAACCCTTCCTAGCTTGATCAATCTTCTGCTTGATTCAAATGATCTCAGTGGTCCAATTCCGCAGCAGTTATTTCAAGTTCCAAAATTCAACTTTTCTGCAAACAAGTTAAATTGTGGCTGGAAGTCTCTTCATGCCTGTGCTTCAGACAGTACAAACTCAGGTTCTTCAAATAAACCCAAGGTTGGCCTTATAGTTGGAATAATTGCTGGGTTTACCGTTGCTCTTCTTTTGGTGGGAGTATTATTTTTCTTGTCCAAGGGTAGATATAAAAGCTACAAGCGCGAAGTGTTTGTAGATGTTGCAGGTGAAGTTGATCGAAGAATTGCATTTGGTCAGCTGAAAAGATTTGCATGGAGGGAACTACAGCTAGCCACAGACAACTTTAGCGAGAAAAATGTTTTAGGACAAGGAGGCTTTGGAAAGGTGTACAAAGGGGTGCTTGCAGATGGCACCAAAGTTGCTGTGAAACGGTTGACTGATTATGAAAGTCCGGGGGGAGATGCTGCTTTTCAGCGTGAAGTTGAGATGATTAGTGTAGCTGTTCATAGAAATCTGTTGCGTCTCATTGGGTTCTGTACAACTCAGACAGAACGCCTATTGGTGTATCCCTTTATGCAGAACTTGAGTGTTGCCTACCGTCTTCGAGAACTTAAGCCAGGAGAGGCTGTTCTAGATTGGCCTACTCGGAAACGGGTGGCATTGGGCACAGCTCGTGGTTTAGAGTATCTTCATGAACATTGCAACCCAAAGATTATTCATCGAGATGTCAAGGCAGCTAATGTATTGCTTGATGAAGATTTTGAAGCAGTTGTCGGCGATTTTGGCTTAGCAAAGTTGGTTGATGTTAGAAAGACCAATGTCACTACTCAAGTTCGAGGGACAATGGGTCACATAGCACCGGAGTACTTATCTACTGGAAAATCATCCGAAAGGACTGATGTTTTTGGTTATGGTATCATGCTTTTAGAACTTGTAACGGGGCAACGTGCAATCGACTTCTCACGCTTAGAAGAAGAAGACGATGTTTTACTGCTCGACCATGTTAAGAAACTAGAAAGGGAGAAACGACTTGATGCCATTGTTGATCGAAATCTAAAAAACTACAACATTCAAGAGGTGGAGATGATGATTCAAGTCGCATTGCTGTGTACACAGCCATGCTCGGATGACCGCCCAGCAATGTCACAAGTCGTTCGGATGCTCGAGGGAGAGGGATTGGCAGAGAGGTGGGAAGAATGGCAGCATTTGGAGGTGACTCGCAGACAAGAATATGAGAGACTGCAGAGAAGATTTGAATGGGGAGAAGATTCAATACATAGACAGGATGCAATCCAGTTGTCTGGTGGAAGATGA 1833 42.61 MMLVRMGELYLTILILACLHYLALSDFQGDALFALKNTLNATANQLTDWNPNQVNPCTWSNVICSGSNVISVSLSTMGFTGTLSPRIGLLKSLSTLILQGNYITGEIPKDFGNLTNLVSLDLGNNSLTGQIPSSLGNLKKLQFLTLSQNRLTGTIPESLSTLPSLINLLLDSNDLSGPIPQQLFQVPKFNFSANKLNCGWKSLHACASDSTNSGSSNKPKVGLIVGIIAGFTVALLLVGVLFFLSKGRYKSYKREVFVDVAGEVDRRIAFGQLKRFAWRELQLATDNFSEKNVLGQGGFGKVYKGVLADGTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSVAYRLRELKPGEAVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLKNYNIQEVEMMIQVALLCTQPCSDDRPAMSQVVRMLEGEGLAERWEEWQHLEVTRRQEYERLQRRFEWGEDSIHRQDAIQLSGGR 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31994297 32000880 + ClG42_07g0172800.10 Clacu07g1728 254326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1728 610 Gene3D Phosphorylase Kinase; domain 1 257 364 - -
Clacu07g1728 610 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524(InterPro)
Clacu07g1728 610 SMART serkin_6 288 561 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1728 610 Pfam Leucine rich repeat 92 151 IPR001611 GO:0005515(InterPro)
Clacu07g1728 610 FunFam Putative LRR receptor-like serine/threonine-protein kinase 25 208 - -
Clacu07g1728 610 SUPERFAMILY L domain-like 28 197 - -
Clacu07g1728 610 Gene3D Transferase(Phosphotransferase) domain 1 365 581 - -
Clacu07g1728 610 ProSiteProfiles Protein kinase domain profile. 288 566 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1728 610 FunFam Somatic embryogenesis receptor kinase 1 257 364 - -
Clacu07g1728 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1728 610 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 608 - -
Clacu07g1728 610 SUPERFAMILY Protein kinase-like (PK-like) 268 562 IPR011009 -
Clacu07g1728 610 Gene3D Ribonuclease Inhibitor 26 207 IPR032675 -
Clacu07g1728 610 Pfam Protein tyrosine and serine/threonine kinase 291 561 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1728 610 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Clacu07g1728 610 FunFam Somatic embryogenesis receptor-like kinase 1 365 581 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0012 Clacu-Chr2:174345 Clacu07g1728 Clacu-Chr7:31994297 5.60E-175 dispersed
Clacu07g1728 Clacu-Chr7:31994297 Clacu08g0459 Clacu-Chr8:7191733 1.20E-137 dispersed
Clacu07g1728 Clacu-Chr7:31994297 Clacu07g1729 Clacu-Chr7:32009446 4.50E-233 tandem
Clacu01g0527 Clacu-Chr1:5205519 Clacu07g1728 Clacu-Chr7:31994297 4.40E-40 wgd
Clacu03g1595 Clacu-Chr3:29591849 Clacu07g1728 Clacu-Chr7:31994297 6.30E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73729 PF00069 Pkinase 1.80E-42 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1728 - - - 0.0