Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1729 ATGGGAAAACTCTATCTTACAACTCTAGTTCTGGCTTGCTTTCATTACTTTGCTCTGTCTGATTTTCAAGGTGAAGCACTCATTGCATTCAAGAACGCATTGAATGCAACAAATAGTCAGCTCAAAGATTGGAACCCAAATCATGTCAATCCATGCAGTAGTTGGTCCAATATTATGTGTAATGGGAACAATGTGACAGCTATAACCTTGCCAACAATGGGATTTACTGGAACCTTGTCTCCAACAATTGTTGCGATAAAATCTCTTTCAACCCTGAACTTGAAGGGAAATTACATAACTGGAGGGATACCAGATGAATTTGGAAACCTGACAAATTTGGTCACTTTGGATCTAGAAAATAACAGCCTAATTGGTCAAATACCATCGTCCCTGGGTAATCTTAAGAAACTACGGTTCCTAACTCTGAGTCAAAATCATCTAACTGGGACTATTCCTGAGACATTTTCAACCCTTCCTAGCTTGATCAATCTTTCGCTTGATTCAAATAATCTCAGTGGCCAAATTCCGGAGCAGTTATTTCAAGTTTCAAAATTCAACTTTTCTGGAAATAAATTGGATTGTGGCAAAAATTCACGTCGATCCTGTGATTCGGACAGTACAAACTCAGGTGCTTCAAATAAGTCGAAGGTCGGCCTCATAGCTGGACTTATTGCTGGGTTAATAGTTGCTCTTCTTTTGGTCGGATTATTATTTTTATTGTGTAAGCGTAGATATAAAGGCTACAAGGGTGAAGTCTTCGAAGATGTTCCCGGTGAAATTGATCGAAGAATTGCATTTGGTCAGCTGAAAAGATTTGCATGGAGGGAACTACAGCTAGCTACAGAAAATTTTAGTGAGGAAAATGTTATAGGACAAGGAGGCTTTGGAAGGGTTTACAAAGGGGTGCTTGCTGATGGCACCAAGGTTGCAGTGAAACAGTCAACTAATTATGAAAGCCTTGGGGGAGATGCTGCTTTTCTGCGTGAAGTTGAGATGATTAGTGTAGCTGTTCATAGAAATCTATTGCGGCTGATTGGGTTCTGTACAACTCAGACTGAACGCTTATTGGTATATCCCTATATGCAGAACTTGAGTGTTGCCTACCATCTTCGAGAACTTAAGCCTGGGGAACCTATTTTAGATTGGCCTGCTCGAAAACGTGTGGCATTGGGCACAGCTCGTGGTTTAGGATATCTTCATGAACATTGCAATCCAAAGATTATCCACCGAGATGTTAAGGCTGCTAATGTATTGCTTGATGAGGATTTTGAAGCAGTTGTTGGTGATTTTGGCCTGGCCAAGTTGGTTGATGTTAGGAGGACTAGTGTCACAACTCAAGTTCGGGGGACGGCTGGCCACATAGCACCAGAGTACTTATCCACTGGGAAATCATCAGAAAAGACTGATGTTTTTGGTTATGGCATTATGCTTTTAGAACTTATTACAGGGCAACGTGCGATTGACTTCTCACGCTTTGAAGGAGATGATGATGTTTTACTGCTAGACCATGTCAAGAAATTGGAAAGGGAGAAGCGACTCAATATTATTGTGGATGGAAACCTGAATAACTATGATATCAGAGAGGTGGAGACAATGGCCCAAGTTGCGCTCCTATGCACACAGCCATCTTCGGAAAGCCGACCAACAATGTCACAGGTCGTTCGGATGTTAGAAGGCGAGGGGCTTGCAGGGAGGTGGGAGGAATGGCAGCAGTTAGAGGTGAGTCGCAGACAAGATTACGAGAGAATGCAAAGAAGATTTGAATTGGGGAATGATTCTATTTATAGACAGGAAGCTATCCAGTTGTCTGGTGGAAGATGA 1821 41.95 MGKLYLTTLVLACFHYFALSDFQGEALIAFKNALNATNSQLKDWNPNHVNPCSSWSNIMCNGNNVTAITLPTMGFTGTLSPTIVAIKSLSTLNLKGNYITGGIPDEFGNLTNLVTLDLENNSLIGQIPSSLGNLKKLRFLTLSQNHLTGTIPETFSTLPSLINLSLDSNNLSGQIPEQLFQVSKFNFSGNKLDCGKNSRRSCDSDSTNSGASNKSKVGLIAGLIAGLIVALLLVGLLFLLCKRRYKGYKGEVFEDVPGEIDRRIAFGQLKRFAWRELQLATENFSEENVIGQGGFGRVYKGVLADGTKVAVKQSTNYESLGGDAAFLREVEMISVAVHRNLLRLIGFCTTQTERLLVYPYMQNLSVAYHLRELKPGEPILDWPARKRVALGTARGLGYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRRTSVTTQVRGTAGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAIDFSRFEGDDDVLLLDHVKKLEREKRLNIIVDGNLNNYDIREVETMAQVALLCTQPSSESRPTMSQVVRMLEGEGLAGRWEEWQQLEVSRRQDYERMQRRFELGNDSIYRQEAIQLSGGR 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32009446 32016043 + ClG42_07g0172900.10 Clacu07g1729 254327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1729 606 Pfam Leucine rich repeat 88 147 IPR001611 GO:0005515(InterPro)
Clacu07g1729 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1729 606 SMART LRR_typ_2 110 133 IPR003591 -
Clacu07g1729 606 SMART LRR_typ_2 134 157 IPR003591 -
Clacu07g1729 606 SMART LRR_typ_2 158 182 IPR003591 -
Clacu07g1729 606 SMART serkin_6 284 557 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1729 606 SUPERFAMILY L domain-like 23 193 - -
Clacu07g1729 606 Pfam Protein tyrosine and serine/threonine kinase 287 557 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1729 606 Gene3D Ribonuclease Inhibitor 21 204 IPR032675 -
Clacu07g1729 606 FunFam Somatic embryogenesis receptor-like kinase 1 361 577 - -
Clacu07g1729 606 Gene3D Transferase(Phosphotransferase) domain 1 361 577 - -
Clacu07g1729 606 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 20 181 - -
Clacu07g1729 606 ProSiteProfiles Protein kinase domain profile. 284 562 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1729 606 FunFam Somatic embryogenesis receptor kinase 1 253 360 - -
Clacu07g1729 606 SUPERFAMILY Protein kinase-like (PK-like) 263 558 IPR011009 -
Clacu07g1729 606 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Clacu07g1729 606 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 605 - -
Clacu07g1729 606 Gene3D Phosphorylase Kinase; domain 1 253 360 - -
Clacu07g1729 606 Pfam Leucine Rich Repeat 160 179 IPR001611 GO:0005515(InterPro)
Clacu07g1729 606 ProSitePatterns Protein kinases ATP-binding region signature. 290 312 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1729 Clacu-Chr7:32009446 Clacu08g0459 Clacu-Chr8:7191733 8.90E-125 dispersed
Clacu07g1728 Clacu-Chr7:31994297 Clacu07g1729 Clacu-Chr7:32009446 4.50E-233 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73730 PF00069 Pkinase 2.70E-42 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1729 - - - 0.0