Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0027 ATGTCTCGAAGATCGACCAGGTTAGTGGAAAAGGTGAATGAATATTTAGAGAAACCCACAAATAGTGAAACTGCAAAATCATCCAGAACTAAGAGATATGGTGTATCTAAGGGAAACCTTAAATCTTCTAGGAGTCAGAAGTGGACACGAAATAATGAGATTAGGGTAAATGAAGTTACGTGTCCTCCATCTTTTGAGCAATTAGAGGGAAAGAAGAGAAAGACATCTTGTAAGAGGTCAATCACAAGAGCAACTACTTCAAAGAAGTTTAGGTCCGAGGAGGGGATCAACAAAAAAGGGAGTGGGAGATTATGGAAGAGGGTGTATTATCAAAAAGTGGTTTTTGATGGTGGTGAATTTGAGGTTGGGGATGATGTTTATGTGAGGAGGAGAGAAGATGCAAGCTCTGATGATGAAGACCCTGAAGTTGAGGAGTGTAGAGTGTGCTTTAAGTCTGGAAAGGCTATAATGATCGAGTGTGATGATTGTCTTGGTGGTTTTCATTTGAAGTGTTTGAAGCCGCCATTGAAGGTAATCCCTGAGGGGGATTGGATTTGTGGGTTTTGTGAGGCTGCTAAAATGGGCAAAGAGGTTCAGTTTCCAAAGCCTCCGGAGGGTAAAAAACGGGTTAGGACAATGAGAGAGAAGCTTCTAGCAGGCGATTTGTGGGCTGCTCACATTGAAAGTTTATGGAAAGAAGTGAATGGTAACCATCAGTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACCGCAGCTGGAAGGCAACCACATAACTTGAAGAGAGAGCTTTATTTAACTAATGATTATGCAGATATTGAGATGGAATCACTTCTTAGACTGTGTGAAGTCATGAATCCTAAAGACTATTATAATGCCAAGGAAGGGGACGATATATTTTTATGTGAGTATGAATATGACGTTCGTTGGCATAGTTTCAAGAGATTAGCTGAAATTGATAAAGAAGAGGATAGCGAAGCAGTTGATAGTGACAAAGAGTGGAAGTTGGACCAGAATGCAGACTCTGATTCAGATGGTGATGTGGAATATGAAGAAGAGAGAGCACACATTTTACAATCTCGAAACTACTCAAGATCAACCCATGAATTGGCCGCAAATTCAAGGAAAGGACGATTTTGTGGACTACAAAAGATAGGAGCTAAGAAGATCCCAGAGCATATAAGATGCCACAAACAGACTGAATTAGAAAGAGCAAAGGCAACCCTCATGTTGGCGTCCCTACCCAAGTCTCTACCGTGTAGAAATGAAGAAATTGAGGAGATAACTACATTTATAGAAAGTGCTTTATGCGATGATCAATGCTTGGGGCGATGCTTGTACATCCATGGTGTTCCCGGAACAGGCAAGACAATGAGTGTGCTGTCAGTAATGAGGAACTTGCGGGCTAAAGTTGATGCAGGAAATATAAGGCCTCATTGCTTTGTGGAGGTTAATGGTCTAAAGCTGGCAGCGCCAGAAAATATATACAGGGTTATACATGAAGCATTAACCGGGTATAGGGTTAATTGGAAAAAGGCGCTTCAGTTGTTGACCAAACGGTTTTCAGATGTAAATAATTGCAGGGATGATGAGCGACCTTGCATTCTGCTCATTGATGAACTTGATCTTCTTGTAACAAGAAACCAGTCAGTTCTATACAACATTCTTGATTGGCCTACAAAGCCACAAGCAAAGTTGATTGTGATAGGAATTGCAAATACCATGGACCTACCTGAGAAGTTACTTCCTCGAATTTCAAGCCGAATGGGTATTGAAAGGCTTTGTTTTGGCCCTTATAACTATCAGCAACTTCAAGAAATCATTTCGAGCCGCCTTGAAGGAATCAATGCGTTTGAGAAACAAGCTATTGAATTCGCATCGAGAAAGGTAGCTGCTATTTCAGGAGATGCACGCCGTGCTCTGGAGATATGTAGGCGTGCAGCTGAAATTACGGATTATCATTTAAAGAAGCAGCTGAGTTTGACTTCCAACACTGCGAAAACACATGTAGGAATAACTGAGGTGGAAGCAGCGATTCAAGAAATGTTTCAAGCACCTCATATTCAAGTGATGAAGAGTTGTTCTAAGCAGAGTAAGATCTTCTTGACAGCCATGGTGCACGAACTTTATAAAACTGGAATGGGTGAAGCAACCTTTGAAAAGCTTGCCATGACTGTCTCGTATCTTTGTACAAGCAATGGAGAGGAATTTCCTGGATATGATGCTCTCTTGAAAGTTGGCTGTAGGCTTGGTGAGTGCAGAATTATTTTATGTGAATCAGGGGCTAAACACCGGTTGCAAAAGTTACAGCTTAATTTTCCAAGTGATGACGTCTCATTTGCACTGAAAGACAAAGTGGAAGCAATGGCAGAACGCATAACAAAGATGCACCGTGAAGTAGTTGAGCATTTGGAGGCTGCTGCTTCCTACAAAAACTGCTGGCTTACAGTGACAAGCATCACCACCTGA 2469 41.51 MSRRSTRLVEKVNEYLEKPTNSETAKSSRTKRYGVSKGNLKSSRSQKWTRNNEIRVNEVTCPPSFEQLEGKKRKTSCKRSITRATTSKKFRSEEGINKKGSGRLWKRVYYQKVVFDGGEFEVGDDVYVRRREDASSDDEDPEVEECRVCFKSGKAIMIECDDCLGGFHLKCLKPPLKVIPEGDWICGFCEAAKMGKEVQFPKPPEGKKRVRTMREKLLAGDLWAAHIESLWKEVNGNHQCKVRWYIIPEETAAGRQPHNLKRELYLTNDYADIEMESLLRLCEVMNPKDYYNAKEGDDIFLCEYEYDVRWHSFKRLAEIDKEEDSEAVDSDKEWKLDQNADSDSDGDVEYEEERAHILQSRNYSRSTHELAANSRKGRFCGLQKIGAKKIPEHIRCHKQTELERAKATLMLASLPKSLPCRNEEIEEITTFIESALCDDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRAKVDAGNIRPHCFVEVNGLKLAAPENIYRVIHEALTGYRVNWKKALQLLTKRFSDVNNCRDDERPCILLIDELDLLVTRNQSVLYNILDWPTKPQAKLIVIGIANTMDLPEKLLPRISSRMGIERLCFGPYNYQQLQEIISSRLEGINAFEKQAIEFASRKVAAISGDARRALEICRRAAEITDYHLKKQLSLTSNTAKTHVGITEVEAAIQEMFQAPHIQVMKSCSKQSKIFLTAMVHELYKTGMGEATFEKLAMTVSYLCTSNGEEFPGYDALLKVGCRLGECRIILCESGAKHRLQKLQLNFPSDDVSFALKDKVEAMAERITKMHREVVEHLEAAASYKNCWLTVTSITT 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 570576 611790 + ClG42_08g0002700.10 Clacu08g0027 254369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0027 822 MobiDBLite consensus disorder prediction 327 342 - -
Clacu08g0027 822 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 200 IPR013083 -
Clacu08g0027 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 654 IPR027417 -
Clacu08g0027 822 ProSiteProfiles BAH domain profile. 202 317 IPR001025 GO:0003682(InterPro)
Clacu08g0027 822 Pfam PHD-finger 146 189 IPR019787 -
Clacu08g0027 822 SMART PHD_3 145 190 IPR001965 -
Clacu08g0027 822 Pfam BAH domain 226 315 IPR001025 GO:0003682(InterPro)
Clacu08g0027 822 MobiDBLite consensus disorder prediction 18 51 - -
Clacu08g0027 822 ProSiteProfiles Zinc finger PHD-type profile. 143 192 IPR019787 -
Clacu08g0027 822 SUPERFAMILY FYVE/PHD zinc finger 132 195 IPR011011 -
Clacu08g0027 822 Gene3D - 403 592 IPR027417 -
Clacu08g0027 822 FunFam Origin recognition complex subunit 1 209 401 - -
Clacu08g0027 822 MobiDBLite consensus disorder prediction 1 51 - -
Clacu08g0027 822 FunFam Origin recognition complex subunit 1 399 597 - -
Clacu08g0027 822 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 195 784 IPR050311 GO:0003688(PANTHER)|GO:0005664(PANTHER)|GO:0006270(PANTHER)|GO:0033314(PANTHER)
Clacu08g0027 822 MobiDBLite consensus disorder prediction 1 17 - -
Clacu08g0027 822 FunFam Origin recognition complex subunit 1 594 684 - -
Clacu08g0027 822 ProSitePatterns Zinc finger PHD-type signature. 146 189 IPR019786 -
Clacu08g0027 822 MobiDBLite consensus disorder prediction 327 349 - -
Clacu08g0027 822 Pfam AAA lid domain 619 655 IPR041083 -
Clacu08g0027 822 Pfam CDC6, C terminal winged helix domain 690 781 IPR015163 -
Clacu08g0027 822 SMART BAH_4 177 317 IPR001025 GO:0003682(InterPro)
Clacu08g0027 822 Gene3D - 213 402 IPR043151 -
Clacu08g0027 822 Gene3D - 593 684 - -
Clacu08g0027 822 FunFam Origin recognition complex subunit 1 141 208 - -
Clacu08g0027 822 Pfam ATPase family associated with various cellular activities (AAA) 447 591 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu08g0027 822 SMART AAA_5 442 595 IPR003593 GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2016 Clacu-Chr2:33586016 Clacu08g0027 Clacu-Chr8:570576 2.90E-31 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48110 PF00004 AAA 3.20E-19 CL0023 Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0027 K02603 - csv:101214082 1425.22