Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu08g0027 | ATGTCTCGAAGATCGACCAGGTTAGTGGAAAAGGTGAATGAATATTTAGAGAAACCCACAAATAGTGAAACTGCAAAATCATCCAGAACTAAGAGATATGGTGTATCTAAGGGAAACCTTAAATCTTCTAGGAGTCAGAAGTGGACACGAAATAATGAGATTAGGGTAAATGAAGTTACGTGTCCTCCATCTTTTGAGCAATTAGAGGGAAAGAAGAGAAAGACATCTTGTAAGAGGTCAATCACAAGAGCAACTACTTCAAAGAAGTTTAGGTCCGAGGAGGGGATCAACAAAAAAGGGAGTGGGAGATTATGGAAGAGGGTGTATTATCAAAAAGTGGTTTTTGATGGTGGTGAATTTGAGGTTGGGGATGATGTTTATGTGAGGAGGAGAGAAGATGCAAGCTCTGATGATGAAGACCCTGAAGTTGAGGAGTGTAGAGTGTGCTTTAAGTCTGGAAAGGCTATAATGATCGAGTGTGATGATTGTCTTGGTGGTTTTCATTTGAAGTGTTTGAAGCCGCCATTGAAGGTAATCCCTGAGGGGGATTGGATTTGTGGGTTTTGTGAGGCTGCTAAAATGGGCAAAGAGGTTCAGTTTCCAAAGCCTCCGGAGGGTAAAAAACGGGTTAGGACAATGAGAGAGAAGCTTCTAGCAGGCGATTTGTGGGCTGCTCACATTGAAAGTTTATGGAAAGAAGTGAATGGTAACCATCAGTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACCGCAGCTGGAAGGCAACCACATAACTTGAAGAGAGAGCTTTATTTAACTAATGATTATGCAGATATTGAGATGGAATCACTTCTTAGACTGTGTGAAGTCATGAATCCTAAAGACTATTATAATGCCAAGGAAGGGGACGATATATTTTTATGTGAGTATGAATATGACGTTCGTTGGCATAGTTTCAAGAGATTAGCTGAAATTGATAAAGAAGAGGATAGCGAAGCAGTTGATAGTGACAAAGAGTGGAAGTTGGACCAGAATGCAGACTCTGATTCAGATGGTGATGTGGAATATGAAGAAGAGAGAGCACACATTTTACAATCTCGAAACTACTCAAGATCAACCCATGAATTGGCCGCAAATTCAAGGAAAGGACGATTTTGTGGACTACAAAAGATAGGAGCTAAGAAGATCCCAGAGCATATAAGATGCCACAAACAGACTGAATTAGAAAGAGCAAAGGCAACCCTCATGTTGGCGTCCCTACCCAAGTCTCTACCGTGTAGAAATGAAGAAATTGAGGAGATAACTACATTTATAGAAAGTGCTTTATGCGATGATCAATGCTTGGGGCGATGCTTGTACATCCATGGTGTTCCCGGAACAGGCAAGACAATGAGTGTGCTGTCAGTAATGAGGAACTTGCGGGCTAAAGTTGATGCAGGAAATATAAGGCCTCATTGCTTTGTGGAGGTTAATGGTCTAAAGCTGGCAGCGCCAGAAAATATATACAGGGTTATACATGAAGCATTAACCGGGTATAGGGTTAATTGGAAAAAGGCGCTTCAGTTGTTGACCAAACGGTTTTCAGATGTAAATAATTGCAGGGATGATGAGCGACCTTGCATTCTGCTCATTGATGAACTTGATCTTCTTGTAACAAGAAACCAGTCAGTTCTATACAACATTCTTGATTGGCCTACAAAGCCACAAGCAAAGTTGATTGTGATAGGAATTGCAAATACCATGGACCTACCTGAGAAGTTACTTCCTCGAATTTCAAGCCGAATGGGTATTGAAAGGCTTTGTTTTGGCCCTTATAACTATCAGCAACTTCAAGAAATCATTTCGAGCCGCCTTGAAGGAATCAATGCGTTTGAGAAACAAGCTATTGAATTCGCATCGAGAAAGGTAGCTGCTATTTCAGGAGATGCACGCCGTGCTCTGGAGATATGTAGGCGTGCAGCTGAAATTACGGATTATCATTTAAAGAAGCAGCTGAGTTTGACTTCCAACACTGCGAAAACACATGTAGGAATAACTGAGGTGGAAGCAGCGATTCAAGAAATGTTTCAAGCACCTCATATTCAAGTGATGAAGAGTTGTTCTAAGCAGAGTAAGATCTTCTTGACAGCCATGGTGCACGAACTTTATAAAACTGGAATGGGTGAAGCAACCTTTGAAAAGCTTGCCATGACTGTCTCGTATCTTTGTACAAGCAATGGAGAGGAATTTCCTGGATATGATGCTCTCTTGAAAGTTGGCTGTAGGCTTGGTGAGTGCAGAATTATTTTATGTGAATCAGGGGCTAAACACCGGTTGCAAAAGTTACAGCTTAATTTTCCAAGTGATGACGTCTCATTTGCACTGAAAGACAAAGTGGAAGCAATGGCAGAACGCATAACAAAGATGCACCGTGAAGTAGTTGAGCATTTGGAGGCTGCTGCTTCCTACAAAAACTGCTGGCTTACAGTGACAAGCATCACCACCTGA | 2469 | 41.51 | MSRRSTRLVEKVNEYLEKPTNSETAKSSRTKRYGVSKGNLKSSRSQKWTRNNEIRVNEVTCPPSFEQLEGKKRKTSCKRSITRATTSKKFRSEEGINKKGSGRLWKRVYYQKVVFDGGEFEVGDDVYVRRREDASSDDEDPEVEECRVCFKSGKAIMIECDDCLGGFHLKCLKPPLKVIPEGDWICGFCEAAKMGKEVQFPKPPEGKKRVRTMREKLLAGDLWAAHIESLWKEVNGNHQCKVRWYIIPEETAAGRQPHNLKRELYLTNDYADIEMESLLRLCEVMNPKDYYNAKEGDDIFLCEYEYDVRWHSFKRLAEIDKEEDSEAVDSDKEWKLDQNADSDSDGDVEYEEERAHILQSRNYSRSTHELAANSRKGRFCGLQKIGAKKIPEHIRCHKQTELERAKATLMLASLPKSLPCRNEEIEEITTFIESALCDDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRAKVDAGNIRPHCFVEVNGLKLAAPENIYRVIHEALTGYRVNWKKALQLLTKRFSDVNNCRDDERPCILLIDELDLLVTRNQSVLYNILDWPTKPQAKLIVIGIANTMDLPEKLLPRISSRMGIERLCFGPYNYQQLQEIISSRLEGINAFEKQAIEFASRKVAAISGDARRALEICRRAAEITDYHLKKQLSLTSNTAKTHVGITEVEAAIQEMFQAPHIQVMKSCSKQSKIFLTAMVHELYKTGMGEATFEKLAMTVSYLCTSNGEEFPGYDALLKVGCRLGECRIILCESGAKHRLQKLQLNFPSDDVSFALKDKVEAMAERITKMHREVVEHLEAAASYKNCWLTVTSITT | 822 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 570576 | 611790 | + | ClG42_08g0002700.10 | Clacu08g0027 | 254369 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu08g0027 | 822 | MobiDBLite | consensus disorder prediction | 327 | 342 | - | - | |
Clacu08g0027 | 822 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 125 | 200 | IPR013083 | - | |
Clacu08g0027 | 822 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 412 | 654 | IPR027417 | - | |
Clacu08g0027 | 822 | ProSiteProfiles | BAH domain profile. | 202 | 317 | IPR001025 | GO:0003682(InterPro) | |
Clacu08g0027 | 822 | Pfam | PHD-finger | 146 | 189 | IPR019787 | - | |
Clacu08g0027 | 822 | SMART | PHD_3 | 145 | 190 | IPR001965 | - | |
Clacu08g0027 | 822 | Pfam | BAH domain | 226 | 315 | IPR001025 | GO:0003682(InterPro) | |
Clacu08g0027 | 822 | MobiDBLite | consensus disorder prediction | 18 | 51 | - | - | |
Clacu08g0027 | 822 | ProSiteProfiles | Zinc finger PHD-type profile. | 143 | 192 | IPR019787 | - | |
Clacu08g0027 | 822 | SUPERFAMILY | FYVE/PHD zinc finger | 132 | 195 | IPR011011 | - | |
Clacu08g0027 | 822 | Gene3D | - | 403 | 592 | IPR027417 | - | |
Clacu08g0027 | 822 | FunFam | Origin recognition complex subunit 1 | 209 | 401 | - | - | |
Clacu08g0027 | 822 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Clacu08g0027 | 822 | FunFam | Origin recognition complex subunit 1 | 399 | 597 | - | - | |
Clacu08g0027 | 822 | PANTHER | CELL DIVISION CONTROL PROTEIN 6-RELATED | 195 | 784 | IPR050311 | GO:0003688(PANTHER)|GO:0005664(PANTHER)|GO:0006270(PANTHER)|GO:0033314(PANTHER) | |
Clacu08g0027 | 822 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Clacu08g0027 | 822 | FunFam | Origin recognition complex subunit 1 | 594 | 684 | - | - | |
Clacu08g0027 | 822 | ProSitePatterns | Zinc finger PHD-type signature. | 146 | 189 | IPR019786 | - | |
Clacu08g0027 | 822 | MobiDBLite | consensus disorder prediction | 327 | 349 | - | - | |
Clacu08g0027 | 822 | Pfam | AAA lid domain | 619 | 655 | IPR041083 | - | |
Clacu08g0027 | 822 | Pfam | CDC6, C terminal winged helix domain | 690 | 781 | IPR015163 | - | |
Clacu08g0027 | 822 | SMART | BAH_4 | 177 | 317 | IPR001025 | GO:0003682(InterPro) | |
Clacu08g0027 | 822 | Gene3D | - | 213 | 402 | IPR043151 | - | |
Clacu08g0027 | 822 | Gene3D | - | 593 | 684 | - | - | |
Clacu08g0027 | 822 | FunFam | Origin recognition complex subunit 1 | 141 | 208 | - | - | |
Clacu08g0027 | 822 | Pfam | ATPase family associated with various cellular activities (AAA) | 447 | 591 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Clacu08g0027 | 822 | SMART | AAA_5 | 442 | 595 | IPR003593 | GO:0016887(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g2016 | Clacu-Chr2:33586016 | Clacu08g0027 | Clacu-Chr8:570576 | 2.90E-31 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48110 | PF00004 | AAA | 3.20E-19 | CL0023 | Clacu | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu08g0027 | K02603 | - | csv:101214082 | 1425.22 |