Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0042 ATGCAGTCCACAACTGGTGCTGGTGCTACTGGTAGTCGTAGCTCCGGCGGCGGTACCGGCGGTGGCCTCGCTCGCTTCCGCTCTGCCCCTGCCGCCTGGTTGGAAGCGCTTTTGGAGGACGACGAGGAGGACCCTCTCAAGCCCAATCACTGCTTGACTCAGCTTCTCGCCGCCGACTCCTCCGACCTCGACTCTCCCGCTGATCAGCCCTTGTTCGACCCCAATCCCTCCCCGGCCTTCCACAGACAGAATAGCTCTCCCGCCGAGTTTCTCGCCGCCTCTGGAATTGGGGAAGGATTTTACACTGCCTATGCTCTCAATTCCTCCCCCACTCTTGACATCTCTCCCACCTCCAAGCGAGCTAGAGAAGTCGACCCCCAAAACTTCTCCCCCAAATTTTCACCTCAACTGAAAAGGGAAGGAAGTGGAGTTTCCAGTTTAATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGGGTAAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCGGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGCAAACAAACACTGCAGATATGTTAGAAGAAGCAGTAGAGTATGTCAAATTCCTTCAAAAGCAAATTCAGGAACTCACGGAGCATCAGCGCAGGTGCAAATGCATGGTAGTAAAAGTTATAGTAAGTGAAAGGACGTACCATAGAGTGGAAGAAACCCGACATCGCTTTGTTGAAATAACGCAGTACAAGAAACCAAGGCCAAATGGTGGGACCGAATTCACAGCAAGCAGAGCATCGGATGAAGAAGACGACGGTGGTGCAACAGTGATTGCTGTTACAATGGAGGACTTACGGCTGCCGGCTGAAATTACACTTGCATCGAAAAAGGAATATAAAAGCCTAAAACCACGTCGTTTTGGGCCTTCACAGTGA 978 51.84 MQSTTGAGATGSRSSGGGTGGGLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLAADSSDLDSPADQPLFDPNPSPAFHRQNSSPAEFLAASGIGEGFYTAYALNSSPTLDISPTSKRAREVDPQNFSPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKFLQKQIQELTEHQRRCKCMVVKVIVSERTYHRVEETRHRFVEITQYKKPRPNGGTEFTASRASDEEDDGGATVIAVTMEDLRLPAEITLASKKEYKSLKPRRFGPSQ 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 998462 1012798 + ClG42_08g0004200.10 Clacu08g0042 254384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0042 325 FunFam Transcription factor bHLH130 family 171 240 - -
Clacu08g0042 325 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 47 237 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Clacu08g0042 325 CDD bHLH_AtbHLH_like 175 227 IPR045239 -
Clacu08g0042 325 Coils Coil 210 230 - -
Clacu08g0042 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 220 IPR011598 GO:0046983(InterPro)
Clacu08g0042 325 Gene3D - 171 242 IPR036638 GO:0046983(InterPro)
Clacu08g0042 325 MobiDBLite consensus disorder prediction 116 141 - -
Clacu08g0042 325 MobiDBLite consensus disorder prediction 265 288 - -
Clacu08g0042 325 MobiDBLite consensus disorder prediction 1 17 - -
Clacu08g0042 325 Pfam Helix-loop-helix DNA-binding domain 176 221 IPR011598 GO:0046983(InterPro)
Clacu08g0042 325 MobiDBLite consensus disorder prediction 57 76 - -
Clacu08g0042 325 SMART finulus 176 226 IPR011598 GO:0046983(InterPro)
Clacu08g0042 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 238 IPR036638 GO:0046983(InterPro)
Clacu08g0042 325 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0042 Clacu-Chr8:998462 Clacu10g1715 Clacu-Chr10:30668859 3.80E-29 dispersed
Clacu08g0042 Clacu-Chr8:998462 Clacu07g1674 Clacu-Chr7:31457004 4.30E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48111 PF00010 HLH 4.70E-10 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0042 - - - 0.0