Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu08g0058 | ATGGGGAGAGGAAAGATTGAAATAAAGAGAATAGAAAACACAACAAATCGACAAGTGACATTCTGCAAGAGAAGAAATGGACTTTTGAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAATACTCCAATAACAGTATCAAAACTACTATTGAGAGGTACAAGAAGGCTTGTTCTGATAGCTCAGCTACCAGCTCTGTCACTGAACTAAATACTCAATATTATCAGCAAGAATCGGCTAAGCTGCGTCAACAAATACAAATGCTTCAGAATTCCAACAGCAATCTTGTTAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACAGTCAAAGAACTAAAGCAGCTTGAAAATAGGCTTGAAAGGGGCATCACTAGAATCAGATCAAAGAAGCATGAAATGTTGCTAGCAGAAATTGAGTATCTTCAAAAAAGGGAGATTGAGCTGGAGAATGAAAATGTGTGTATTAGAACCAAGATAGCTGAAGTTGAGAGGCTCCAACAAGCAAACATGGTATCTGGACAAGAACTGAATGCAATTCAGGCATTGGCTTCTCGTAATTTCTTCTCTCCTAATATGATGGAAGGTGGAGCTGTTACTTACTCTCATCAAGACAAGAAGATGCTTCATATTGGCTGTTTTGGTGACCAAAATGATGGGGACAAATGTGATTGGGTTCAAGCATTGATGTTGGTGGCAACCCTGATTGTTACAGTGGCTTTTCAAAGTGCCCTTTGGCAACAAGATATTTCCTTCAACTCTACTGCTGTTGTTCCTAATTCGTTTCGTAGTAGCGACACTTTGAAACTTTCGTAG | 861 | 40.42 | MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNSNLVRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLQQANMVSGQELNAIQALASRNFFSPNMMEGGAVTYSHQDKKMLHIGCFGDQNDGDKCDWVQALMLVATLIVTVAFQSALWQQDISFNSTAVVPNSFRSSDTLKLS | 286 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1344694 | 1356148 | - | ClG42_08g0005800.10 | Clacu08g0058 | 254400 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu08g0058 | 286 | ProSiteProfiles | K-box domain profile. | 87 | 181 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Clacu08g0058 | 286 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 197 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Clacu08g0058 | 286 | SUPERFAMILY | SRF-like | 2 | 78 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu08g0058 | 286 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu08g0058 | 286 | Pfam | K-box region | 86 | 175 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Clacu08g0058 | 286 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu08g0058 | 286 | FunFam | agamous-like MADS-box protein AGL11 | 13 | 96 | - | - | |
Clacu08g0058 | 286 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu08g0058 | 286 | Coils | Coil | 128 | 167 | - | - | |
Clacu08g0058 | 286 | Gene3D | - | 13 | 82 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu08g0058 | 286 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu08g0058 | 286 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Clacu08g0058 | 286 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu08g0058 | 286 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu08g0058 | 286 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g2487 | Clacu-Chr1:35266813 | Clacu08g0058 | Clacu-Chr8:1344694 | 7.60E-70 | dispersed | |
Clacu02g1880 | Clacu-Chr2:32295873 | Clacu08g0058 | Clacu-Chr8:1344694 | 4.90E-65 | dispersed | |
Clacu03g0731 | Clacu-Chr3:8139602 | Clacu08g0058 | Clacu-Chr8:1344694 | 3.30E-70 | dispersed | |
Clacu07g0944 | Clacu-Chr7:23442786 | Clacu08g0058 | Clacu-Chr8:1344694 | 1.20E-09 | dispersed | |
Clacu08g0058 | Clacu-Chr8:1344694 | Clacu11g1657 | Clacu-Chr11:27790692 | 3.10E-35 | dispersed | |
Clacu08g0058 | Clacu-Chr8:1344694 | Clacu08g0065 | Clacu-Chr8:1432424 | 1.40E-24 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48113 | PF01486 | K-box | 3.00E-23 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu08g0058 | K09264 | - | csv:101208072 | 409.068 |