Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0058 ATGGGGAGAGGAAAGATTGAAATAAAGAGAATAGAAAACACAACAAATCGACAAGTGACATTCTGCAAGAGAAGAAATGGACTTTTGAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAATACTCCAATAACAGTATCAAAACTACTATTGAGAGGTACAAGAAGGCTTGTTCTGATAGCTCAGCTACCAGCTCTGTCACTGAACTAAATACTCAATATTATCAGCAAGAATCGGCTAAGCTGCGTCAACAAATACAAATGCTTCAGAATTCCAACAGCAATCTTGTTAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACAGTCAAAGAACTAAAGCAGCTTGAAAATAGGCTTGAAAGGGGCATCACTAGAATCAGATCAAAGAAGCATGAAATGTTGCTAGCAGAAATTGAGTATCTTCAAAAAAGGGAGATTGAGCTGGAGAATGAAAATGTGTGTATTAGAACCAAGATAGCTGAAGTTGAGAGGCTCCAACAAGCAAACATGGTATCTGGACAAGAACTGAATGCAATTCAGGCATTGGCTTCTCGTAATTTCTTCTCTCCTAATATGATGGAAGGTGGAGCTGTTACTTACTCTCATCAAGACAAGAAGATGCTTCATATTGGCTGTTTTGGTGACCAAAATGATGGGGACAAATGTGATTGGGTTCAAGCATTGATGTTGGTGGCAACCCTGATTGTTACAGTGGCTTTTCAAAGTGCCCTTTGGCAACAAGATATTTCCTTCAACTCTACTGCTGTTGTTCCTAATTCGTTTCGTAGTAGCGACACTTTGAAACTTTCGTAG 861 40.42 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNSNLVRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLQQANMVSGQELNAIQALASRNFFSPNMMEGGAVTYSHQDKKMLHIGCFGDQNDGDKCDWVQALMLVATLIVTVAFQSALWQQDISFNSTAVVPNSFRSSDTLKLS 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1344694 1356148 - ClG42_08g0005800.10 Clacu08g0058 254400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0058 286 ProSiteProfiles K-box domain profile. 87 181 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu08g0058 286 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 197 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu08g0058 286 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g0058 286 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g0058 286 Pfam K-box region 86 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu08g0058 286 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g0058 286 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Clacu08g0058 286 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g0058 286 Coils Coil 128 167 - -
Clacu08g0058 286 Gene3D - 13 82 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g0058 286 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g0058 286 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Clacu08g0058 286 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g0058 286 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g0058 286 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2487 Clacu-Chr1:35266813 Clacu08g0058 Clacu-Chr8:1344694 7.60E-70 dispersed
Clacu02g1880 Clacu-Chr2:32295873 Clacu08g0058 Clacu-Chr8:1344694 4.90E-65 dispersed
Clacu03g0731 Clacu-Chr3:8139602 Clacu08g0058 Clacu-Chr8:1344694 3.30E-70 dispersed
Clacu07g0944 Clacu-Chr7:23442786 Clacu08g0058 Clacu-Chr8:1344694 1.20E-09 dispersed
Clacu08g0058 Clacu-Chr8:1344694 Clacu11g1657 Clacu-Chr11:27790692 3.10E-35 dispersed
Clacu08g0058 Clacu-Chr8:1344694 Clacu08g0065 Clacu-Chr8:1432424 1.40E-24 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48113 PF01486 K-box 3.00E-23 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0058 K09264 - csv:101208072 409.068