Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0065 ATGGCTCGTGGGAAGGTTCAAATGAAGAGGATTGAGAATCCAGTGCATAGACAAGTTACTTTCTGTAAGCGTCGAGCTGGTCTCCTTAAGAAGGCTAAGGAGCTCTCTGTCCTTTGCAATGCTCAAATTGGAGTTTTCATTTTCTCTGCTCATGGAAAGCTCTATGAACTTGCCACTAAAGGAACCATGCAAGGGCTCATTGAAAGGTACATGAAGCACACCAATGGGAATCAGCCACCAGACCCACCTATTGATCACCAAACTCTGGAAGTAAAGGATGAGGTCATCAGGCTGAAGCAAGAAATTGAAGTTCTAAAGGGTCTCAGGAATGCTTTGGGAGGAGGAGGAAGCGAAGGAATAATGACATTGGATGAGCTTGATATGTTTGAGAAACAACTTGAGATTTGGATTTGTCAAGTGCGTACTACAAAGATGAAGTTCATGTGTGAAGAGATTGAAGCACTGAGGAACCAGGAATTGATACTGAAAGCTGCCAACAAGTATCTTCATGATAAGATGGATGAAAACATTAGCAACACAACTAACATTGAACCTGTGAATATTACTAACTGTCAATATCCACTAACTATACAGGATGAGTTATTTCAGCTTTGCACTTAA 621 41.22 MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATKGTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVLKGLRNALGGGGSEGIMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDENISNTTNIEPVNITNCQYPLTIQDELFQLCT 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1432424 1435786 - ClG42_08g0006500.10 Clacu08g0065 254407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0065 206 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g0065 206 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g0065 206 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g0065 206 Pfam K-box region 88 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu08g0065 206 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu08g0065 206 Gene3D - 15 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g0065 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g0065 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g0065 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g0065 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 180 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu08g0065 206 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Clacu08g0065 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0065 Clacu-Chr8:1432424 Clacu08g1210 Clacu-Chr8:22032334 9.40E-26 dispersed
Clacu08g0058 Clacu-Chr8:1344694 Clacu08g0065 Clacu-Chr8:1432424 1.40E-24 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48114 PF01486 K-box 1.10E-16 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0065 - - - 0.0