Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0080 ATGGGCTGCATGTGCTCAAGAGATTCCTCAGAACCAGAGGATAGCGATCACAAAGAGTCTGAAAAAGATTTGAACAAATCTTCAGTCCAGTTGGTTGCCCCTTCTCCCTCAAAAAGAGAGGATATGCTGTTAGAGATTCAGTTGTCAAGGCAGGCATCTAAACCAAATGGGGGTTCTGTTCATAAAGCAAAGGCCAATGGAGGTTCTGTCCATCGAGCAAAGGAGGATGATGAATCTGAGAATAAATCCATAAAGGCTGCAAAACCAAATAATGATAATGCTTCAGGAGGTGGAAAGCAGCCTGAGATTTTTCGGTTAGCTAGCTTGTCTAAAGGGGCTGAAGCTGAACTTGTCATGGCTGGATGGCCTTCATGGTTAGCTTCCGTTGCTGGAGAAGCCATCAAAGGGTGGGTGCCTCGCCGGGCTGACTCCTTTGAAAAGTTAGACAAAATTGGACAGGGAACTTACAGCAGTGTATATAAAGCCCGTGACCTTGAAACTGGTAAAATTGTGGCATTGAAAAAAGTAAGATTTGTAAATATGGATCCCGAAAGTGTCCGTTTTATGGCTAGGGAAATCTATATTTTGCGCAAACTTGATCATCCAAATGTTATGAAGCTTGAGGGTCTAGTCACTTCCAGAATGTCGGGCAGCTTGTACCTTGTTTTTGAGTACATGGAGCATGACCTTGCTGGCCTTGCAGCAGCTCCTGGACATAAGTTTACGGAGGCTCAGATTAAATGTTATGTGCAACAATTGCTGCATGGACTTGAGCACTGTCATAGTCGAGGAATTCTGCACCGGGATATCAAAGGTTCAAATCTTCTTGTTGACAATAATGGTGTGCTTAAGATTGGAGACTTTGGTCTTGCTACCTTTTTTCAGCCTGATCAAAAGCAGCCATTGACAAGCCGGGTTGTGACGTTGTGGTACAGGGCACCTGAGCTTTTGCTTGGTGCTACCCAATATGGACCTGCCATAGATCTCTGGAGCTGTGGCTGTATCATTGCTGAGCTATTTGCTGGAAAACCTATTATGCCAGGAAGAACAGAGGTGGAACAAATGCACAAAATTTTTAAGCTCTGTGGTTCACCATCTGAGGAGTTCTGGCAGAGAACAAAGTTGCCACATGCAACCAGCTTCAAACCTCAACACCGTTATAAAAGCTGCCTTTCTGAGACATTTAAAAGTTTCCCTTCTTCAGCTCTGGCTCTTGTTAATAAGCTACTTGCTATTGAACCAGAGCACAGAGGATCAGCTACTTTAGCCCTCAGGAGTGAGTTTTTCAGAACAGAACCTCTCCCTTGTGACCCGTCAAGCTTACCAAAATATCCGCCGAGCAAAGAATTCGATGCCAAGCTGCGGAATGAAGAAGAAAAAAAGAAAAAGGCGGAAGCTGTGAAGGGACGCCATCCTGAATCGGTAAGAAGGGGCTCAAGAGACACCAAAGCAGTTCCTACTCCCGAATTCAATACTCAAGGAGATATTACTATGAAGGCACACCCAATCTCGAAAAAAATGAGTGTGAAATACAACCCTCAAGAAGACAGTGAGCCTCCAAGAGTTGCGCAAAATCGGTACAACCACTCAACTTCTATGGTGCACCCAAGCATTGTAGGTTTATGGGGTAAGCCTACCGAAGCCTTGAGAAATTGTGCAGAGTCAAAGACAAAGAAATCTCAGATGCATCAGTCAGTGGGAGATTTATCAACCTCTTCTCTGAAGAAGGAAGACTCGGTGTCTACTAAAGATTGTGGAATGGGTTATGTTCAAAAGAAGAACAGAATACACTACTCAGGACCATTGGTGCCTACAGGGGGAACCATTGAAGACATGCTGAAGGAGCACGAGAGACAAATCCAGCAGGCTTTTCGAAAGGCACGACTCGACAAAGCGAAGACAAACAAGAGTTATGGTGATCAGGTTTGA 1929 44.58 MGCMCSRDSSEPEDSDHKESEKDLNKSSVQLVAPSPSKREDMLLEIQLSRQASKPNGGSVHKAKANGGSVHRAKEDDESENKSIKAAKPNNDNASGGGKQPEIFRLASLSKGAEAELVMAGWPSWLASVAGEAIKGWVPRRADSFEKLDKIGQGTYSSVYKARDLETGKIVALKKVRFVNMDPESVRFMAREIYILRKLDHPNVMKLEGLVTSRMSGSLYLVFEYMEHDLAGLAAAPGHKFTEAQIKCYVQQLLHGLEHCHSRGILHRDIKGSNLLVDNNGVLKIGDFGLATFFQPDQKQPLTSRVVTLWYRAPELLLGATQYGPAIDLWSCGCIIAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEEFWQRTKLPHATSFKPQHRYKSCLSETFKSFPSSALALVNKLLAIEPEHRGSATLALRSEFFRTEPLPCDPSSLPKYPPSKEFDAKLRNEEEKKKKAEAVKGRHPESVRRGSRDTKAVPTPEFNTQGDITMKAHPISKKMSVKYNPQEDSEPPRVAQNRYNHSTSMVHPSIVGLWGKPTEALRNCAESKTKKSQMHQSVGDLSTSSLKKEDSVSTKDCGMGYVQKKNRIHYSGPLVPTGGTIEDMLKEHERQIQQAFRKARLDKAKTNKSYGDQV 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1654864 1659021 - ClG42_08g0008000.10 Clacu08g0080 254422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0080 642 ProSitePatterns Protein kinases ATP-binding region signature. 151 174 IPR017441 GO:0005524(InterPro)
Clacu08g0080 642 Gene3D Transferase(Phosphotransferase) domain 1 228 469 - -
Clacu08g0080 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g0080 642 Gene3D Phosphorylase Kinase; domain 1 132 227 - -
Clacu08g0080 642 MobiDBLite consensus disorder prediction 555 581 - -
Clacu08g0080 642 FunFam probable serine/threonine-protein kinase At1g54610 228 469 - -
Clacu08g0080 642 Coils Coil 447 467 - -
Clacu08g0080 642 PANTHER CELL DIVISION PROTEIN KINASE 144 429 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Clacu08g0080 642 SMART serkin_6 145 429 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0080 642 MobiDBLite consensus disorder prediction 1 99 - -
Clacu08g0080 642 FunFam probable serine/threonine-protein kinase At1g54610 132 227 - -
Clacu08g0080 642 Pfam Protein kinase domain 145 429 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0080 642 ProSiteProfiles Protein kinase domain profile. 145 429 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0080 642 MobiDBLite consensus disorder prediction 9 25 - -
Clacu08g0080 642 MobiDBLite consensus disorder prediction 68 85 - -
Clacu08g0080 642 MobiDBLite consensus disorder prediction 458 483 - -
Clacu08g0080 642 Coils Coil 613 633 - -
Clacu08g0080 642 SUPERFAMILY Protein kinase-like (PK-like) 138 437 IPR011009 -
Clacu08g0080 642 MobiDBLite consensus disorder prediction 558 576 - -
Clacu08g0080 642 CDD STKc_CDK9_like 145 429 - -
Clacu08g0080 642 MobiDBLite consensus disorder prediction 458 494 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0080 Clacu-Chr8:1654864 Clacu11g0205 Clacu-Chr11:1760002 4.00E-192 dispersed
Clacu08g0080 Clacu-Chr8:1654864 Clacu05g0668 Clacu-Chr5:5621629 1.30E-161 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73731 PF00069 Pkinase 1.10E-70 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0080 K08819 - csv:101208709 1205.28