Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0107 ATGGGAGAGCCTAGCTCAATGGGGAGCCACGGCGGTGCGACGTCGAGCTATCGCGGTGTTCGGAAGAGGAAATGGGGGAAATGGGTGTCGGAGATTCGAGAGCCGGGAAAGAAGACGAGAATTTGGTTGGGGAGCTTCGAGACCCCGGAGATGGCAGCAGCGGCCTATGACGTCGCTGCCTACCACTTCCGTGGTCGGGATGCTCGTCTCAACTTCCCGCATCTTGTCAACTCTCTTCCCTTCCCTCTTAGCTCTACTCCTGACGACATCCGTGTTGCCGCCCACGAGGCGGCGTTGCGGTTACGAACAACACCCGCGGTTGTGTCGGAGGGTGAGGAATCTTCAGCCTCGGGTCTTGCCCCAATCACTGTCCGACTGTCGCCGAGCCAAATTCAGGCGATTAATGAGTCAACGTTGGACTCGCCGAAGATGTGGATGCAAATGTCGTCGGAGAGTTTGCTTATGGAGGAGTTCTCAAATGGTACTGTGTTTGTTGATGACATGGACGATGAGATGTGGGAGAATATGCATAATGATTCGTTGTGGGATCCTTAG 555 55.14 MGEPSSMGSHGGATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDVAAYHFRGRDARLNFPHLVNSLPFPLSSTPDDIRVAAHEAALRLRTTPAVVSEGEESSASGLAPITVRLSPSQIQAINESTLDSPKMWMQMSSESLLMEEFSNGTVFVDDMDDEMWENMHNDSLWDP 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2145595 2146149 + ClG42_08g0010700.10 Clacu08g0107 254449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0107 184 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0107 184 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0107 184 Pfam AP2 domain 16 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0107 184 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0107 184 CDD AP2 15 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0107 184 SMART rav1_2 16 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0107 184 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Clacu08g0107 184 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677(InterPro)
Clacu08g0107 184 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0107 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 146 IPR051032 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0107 Clacu-Chr8:2145595 Clacu10g0247 Clacu-Chr10:3029928 3.40E-27 dispersed
Clacu08g0107 Clacu-Chr8:2145595 Clacu08g0111 Clacu-Chr8:2251829 1.60E-48 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48115 PF00847 AP2 3.60E-13 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0107 - - - 0.0