Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0111 ATGGAACCCAATTATAGAGGCGTTCGTAAGCGTAAATGGGGAAAATGGGTCTCCGAAATCCGTGAACCGGGCAAAAAAACCCGAATCTGGCTCGGTAGTTACCATCTCCCGGAAATGGCCGCCGCTGCCTACGACGTCGCTGCCCTCCACCTCCGCGGCCCCGACGCCCGCCTCAACTTCCCCGAGCTGGCCGACTCCTTCCCTCGCCCTGCCAGCTCCTCCCCTGACCACATTCAAGCCGCCGCCCACATGGCTGCATTGCGGCTCGCCAATACCAAGCCGCCGGACCCTCCGGCGCCGGTTCGAGTGGGGCTGTCCCCTAGCCAGATTCAAGCCATTAATGAGTCGCCGTTGGATTCTCCCACCATGTGGATGCAGATGGCGGCGGAGGCGCTTTCTTTACAGCCTCATGACTGGGACGAAGAATATAACATGCACAATCATCATTCCATTTGGGATTATTCTTCAATTTAA 474 57.59 MEPNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDARLNFPELADSFPRPASSSPDHIQAAAHMAALRLANTKPPDPPAPVRVGLSPSQIQAINESPLDSPTMWMQMAAEALSLQPHDWDEEYNMHNHHSIWDYSSI 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2251829 2252302 + ClG42_08g0011100.10 Clacu08g0111 254453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0111 157 Pfam AP2 domain 3 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0111 157 Gene3D AP2/ERF domain 4 62 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0111 157 PRINTS Ethylene responsive element binding protein signature 5 16 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0111 157 PRINTS Ethylene responsive element binding protein signature 43 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0111 157 SMART rav1_2 4 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0111 157 SUPERFAMILY DNA-binding domain 4 62 IPR016177 GO:0003677(InterPro)
Clacu08g0111 157 CDD AP2 3 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0111 157 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 108 IPR051032 -
Clacu08g0111 157 FunFam Ethylene-responsive transcription factor 2 4 62 - -
Clacu08g0111 157 ProSiteProfiles AP2/ERF domain profile. 4 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1766 Clacu-Chr1:29837749 Clacu08g0111 Clacu-Chr8:2251829 2.90E-20 dispersed
Clacu05g2207 Clacu-Chr5:30641871 Clacu08g0111 Clacu-Chr8:2251829 1.10E-20 dispersed
Clacu08g0111 Clacu-Chr8:2251829 Clacu11g0366 Clacu-Chr11:3329865 8.40E-27 dispersed
Clacu08g0107 Clacu-Chr8:2145595 Clacu08g0111 Clacu-Chr8:2251829 1.60E-48 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48116 PF00847 AP2 3.20E-13 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0111 - - - 0.0