Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu08g0111 | ATGGAACCCAATTATAGAGGCGTTCGTAAGCGTAAATGGGGAAAATGGGTCTCCGAAATCCGTGAACCGGGCAAAAAAACCCGAATCTGGCTCGGTAGTTACCATCTCCCGGAAATGGCCGCCGCTGCCTACGACGTCGCTGCCCTCCACCTCCGCGGCCCCGACGCCCGCCTCAACTTCCCCGAGCTGGCCGACTCCTTCCCTCGCCCTGCCAGCTCCTCCCCTGACCACATTCAAGCCGCCGCCCACATGGCTGCATTGCGGCTCGCCAATACCAAGCCGCCGGACCCTCCGGCGCCGGTTCGAGTGGGGCTGTCCCCTAGCCAGATTCAAGCCATTAATGAGTCGCCGTTGGATTCTCCCACCATGTGGATGCAGATGGCGGCGGAGGCGCTTTCTTTACAGCCTCATGACTGGGACGAAGAATATAACATGCACAATCATCATTCCATTTGGGATTATTCTTCAATTTAA | 474 | 57.59 | MEPNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDARLNFPELADSFPRPASSSPDHIQAAAHMAALRLANTKPPDPPAPVRVGLSPSQIQAINESPLDSPTMWMQMAAEALSLQPHDWDEEYNMHNHHSIWDYSSI | 157 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2251829 | 2252302 | + | ClG42_08g0011100.10 | Clacu08g0111 | 254453 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu08g0111 | 157 | Pfam | AP2 domain | 3 | 53 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu08g0111 | 157 | Gene3D | AP2/ERF domain | 4 | 62 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu08g0111 | 157 | PRINTS | Ethylene responsive element binding protein signature | 5 | 16 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu08g0111 | 157 | PRINTS | Ethylene responsive element binding protein signature | 43 | 63 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu08g0111 | 157 | SMART | rav1_2 | 4 | 67 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu08g0111 | 157 | SUPERFAMILY | DNA-binding domain | 4 | 62 | IPR016177 | GO:0003677(InterPro) | |
Clacu08g0111 | 157 | CDD | AP2 | 3 | 63 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu08g0111 | 157 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 2 | 108 | IPR051032 | - | |
Clacu08g0111 | 157 | FunFam | Ethylene-responsive transcription factor 2 | 4 | 62 | - | - | |
Clacu08g0111 | 157 | ProSiteProfiles | AP2/ERF domain profile. | 4 | 61 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g1766 | Clacu-Chr1:29837749 | Clacu08g0111 | Clacu-Chr8:2251829 | 2.90E-20 | dispersed | |
Clacu05g2207 | Clacu-Chr5:30641871 | Clacu08g0111 | Clacu-Chr8:2251829 | 1.10E-20 | dispersed | |
Clacu08g0111 | Clacu-Chr8:2251829 | Clacu11g0366 | Clacu-Chr11:3329865 | 8.40E-27 | dispersed | |
Clacu08g0107 | Clacu-Chr8:2145595 | Clacu08g0111 | Clacu-Chr8:2251829 | 1.60E-48 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48116 | PF00847 | AP2 | 3.20E-13 | CL0081 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu08g0111 | - | - | - | 0.0 |