Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0161 CTCCTATACCGTCGCCGGCCGTTCTCCGACGCCGTCGTGTGCTTCGCCGAGACCGTCCGCCTGCTGTCTGTTTTTCCGTTTGCTGCTTCAACTTTGCAGCAATTTACTGGTGCTGTGGCGAAAATGGTTACTGCAGCGGTTGAGAATCGGGGAAGCGATATGGTAATTGAAGGTAACGAACAGAAGCCGAAGAACATTGTGTCTGATGGGTTCGATGCCAATTATCTCAAAATTTACTACGGGAAGCTTTTCCCGCATGCTGATTTTTTTAAATGGATGTCTTATGGAAATGATGGCAAGCATCCGGGCAGTGACCAATCCTATTTTGGCCGAAGAGAGTTTTCATTCACCTTAGATAATGATATTTATCTACGATTCCAATCTTTCAACAGTCTGTCAGAAATGGAAAATTCGATCAAGGAAAAATGTCCATTTAAAATTGATATTGGGCCTGTATACAGCGTGGATCCTGCAAAGAGACATGCATATGCTGGCGATAATGTATTTACTCCAGTGGAGAGAGAGCTGGTTTTTGATATTGATATGACCGATTATGATGATGTTAGATATTGTTGTTCTGGAGCTGATGTTTGCTTGGATTGCTGGCCTTTAATGACAGCTGCTATCAAAGTGATTGATACTACCCTCCGAGATGACTTTGGATTTAACCACATTCTATGGGTATTTAGTGGTCGACGTGGTGTTCACTGTTGGGTCTGTGATGGCAAAGCTAGAAGGTTGTCCAATGAACAGCGAGCTGCCATTGCTGAATATTTCCATTTATATCAGGGTAATGAAAGTAGTCGCAAGAAAATTTCTCTAACTGGTCCAGTTCTTCATCCATTTCTCGCGAGATCATACATAGAAGTTCTCAAGGATAGCTTTGAATCACAATTGCTTTGTAGTCAAAAGATTTTCTCAACTGAGGAGAGATATGAGAAAATATTAGATATGATTCATGATGAATCCATTACTTCAGAGCTTCGGGGAAGGTGGCAAGATAATAGGCGACCCTCTAAAAATGATGTTAACTCAGTACGATGGGAACAACTGAAAAATATGTTGCAATCAGGGAAACATAAGGCACAAGGAATGCGTAGGCATGTTGAAGAGATTGTTTTCTCGTTTACCTACCCCAGGCTTGATTTGGAGGTTACTAAACACATGAACCATCTGCTAAAAGCACCATTCTGTGTTCATCCCAAAACAGGTCGTATCTGTGTCCCTATTGACCCTGAACACTGTGATGAGTTTGATCCTACTACTGTGCCAACTGTTGCCCAGCTCCTAGAAGAACTTAATGCTGCAGACATGGAAGTAGATAGTGAGACTGACTGGGATAGAACCTCACTTGGGGAGTCTATTAGGTTTTTCAGGTCCGCATTTTTACAGCCGTTACTGAAATCATGCAAGGAGGAGATAGAATCTTCGTTCAATGCGAAAGTGCAACAGTCTAAAAATTCTCTGAGTTGGTAG 1476 42.21 LLYRRRPFSDAVVCFAETVRLLSVFPFAASTLQQFTGAVAKMVTAAVENRGSDMVIEGNEQKPKNIVSDGFDANYLKIYYGKLFPHADFFKWMSYGNDGKHPGSDQSYFGRREFSFTLDNDIYLRFQSFNSLSEMENSIKEKCPFKIDIGPVYSVDPAKRHAYAGDNVFTPVERELVFDIDMTDYDDVRYCCSGADVCLDCWPLMTAAIKVIDTTLRDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHLYQGNESSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLCSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKNDVNSVRWEQLKNMLQSGKHKAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSETDWDRTSLGESIRFFRSAFLQPLLKSCKEEIESSFNAKVQQSKNSLSW 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3049415 3060672 - ClG42_08g0016100.10 Clacu08g0161 254503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0161 491 PANTHER DNA PRIMASE SMALL SUBUNIT 74 477 - GO:0003896(PANTHER)|GO:0005658(PANTHER)|GO:0006269(PANTHER)
Clacu08g0161 491 CDD AE_Prim_S 85 420 IPR014052 GO:0003896(InterPro)|GO:0006269(InterPro)
Clacu08g0161 491 Gene3D DNA primase, PRIM domain 64 472 - -
Clacu08g0161 491 NCBIfam eukaryotic-type DNA primase catalytic subunit PriS 77 430 IPR014052 GO:0003896(InterPro)|GO:0006269(InterPro)
Clacu08g0161 491 SUPERFAMILY Prim-pol domain 73 437 - -
Clacu08g0161 491 FunFam DNA primase 63 472 - -
Clacu08g0161 491 Pfam DNA primase small subunit 178 411 IPR002755 GO:0003896(InterPro)|GO:0006269(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0161 K02684 - csv:101203146 894.419