Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0177 ATGGCTTATGACCATTTGGATCCATCTAAAAGCTATTCGGTTGCTTCAGGACCAGGTCCAATCTCAAGGCCTGCACCAGAACTGAAGCTCTATCAGTTTTTTGTTTTCTGTATTCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTACCTCCTTTATCTTCGTCGACGAAGGGCTGATTGGACTTCCATTCGAATGCGAACATCTGCTGCAGCCAATAACAATAACATCTCTACATCTGAAGTTGGGTTGAAGAAAGAATTCAGGGAGATGCTTCCTATTATTGTATACAATGAGACATTCTTTGTCACTGATACACTTTGTTCGGTTTGTTTAGGAGAATACAAAACAGAAGATAAACTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTGTCCAACCACAACACTTGTCCACTCTGCCGTCTCTCTGTCCTCTCACCGTCGTCTCAACCACCACATATTCAGATCGACATGGGACTCGAATCGTCGAACGAACAACAATGCGAAGAAGCACCTCCTCCACCCAGTACTCAAGCTTGTCAACATACAACACCTCCAGTGTAA 594 42.59 MAYDHLDPSKSYSVASGPGPISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPSCGHVFHLDCIDHWLSNHNTCPLCRLSVLSPSSQPPHIQIDMGLESSNEQQCEEAPPPPSTQACQHTTPPV 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3566777 3568294 + ClG42_08g0017700.10 Clacu08g0177 254519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0177 197 SMART ring_2 109 150 IPR001841 -
Clacu08g0177 197 CDD RING-H2_EL5-like 109 151 - -
Clacu08g0177 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 156 IPR013083 -
Clacu08g0177 197 Pfam Ring finger domain 108 151 IPR001841 -
Clacu08g0177 197 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Clacu08g0177 197 MobiDBLite consensus disorder prediction 171 187 - -
Clacu08g0177 197 PANTHER RING-H2 FINGER PROTEIN ATL16 21 173 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Clacu08g0177 197 MobiDBLite consensus disorder prediction 171 197 - -
Clacu08g0177 197 SUPERFAMILY RING/U-box 93 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0175 Clacu-Chr1:1753737 Clacu08g0177 Clacu-Chr8:3566777 1.60E-20 dispersed
Clacu04g0592 Clacu-Chr4:19199583 Clacu08g0177 Clacu-Chr8:3566777 5.70E-08 dispersed
Clacu08g0177 Clacu-Chr8:3566777 Clacu08g0963 Clacu-Chr8:19712616 5.50E-15 dispersed
Clacu08g0177 Clacu-Chr8:3566777 Clacu09g0367 Clacu-Chr9:3179660 3.40E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0177 K19039 - csv:101219324 348.591