Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0179 ATGATGAAGCTACCGCGCCGGTTGTCCAGGAGTCAGCTATTTGAACAAATTGTGTGTAAGAAAGTTGGTCATGTTGGACATCCTTTGGGGTCGCATCCTTTCTCATCTCGAGTTGGCTTTCCAGATTCGAGACAAAATTTTACTCATACAGTCACAAAGAATGCAAGTGATCGAGTTTATGCTGCTTATAATGTATATAAGGGAAAAGCTGGACTCTCTATGAAGCCTTGCTTGCCAACTTTCACTAAATTAGAGTCTGGGAGTCTTGTAATTGATCGACGTGGCTCAGTAATGCTGTCATTCTTTCCTGCCATAGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCATTGTCTCCAACAGAAGTTGGTACTTTAATCAGTTTGGGTCCCAGAGATTCATGCGAATTCTTCCATGACCCTGGAATGCTTTCCAGTACTGCTGGTCAAGTAAGGAAGAGCTTAACAATTAAGGCCCATGCAGATGGCAATGGCTATTTCATCTCTTTGA 517 42.94 MMKLPRRLSRSQLFEQIVCKKVGHVGHPLGSHPFSSRVGFPDSRQNFTHTVTKNASDRVYAAYNVYKGKAGLSMKPCLPTFTKLESGSLVIDRRGSVMLSFFPAIGERKYDWTKKQLFALSPTEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLTIKAHADGNGYFISL 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3600249 3613122 - ClG42_08g0017900.10 Clacu08g0179 254521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0179 172 SUPERFAMILY ssDNA-binding transcriptional regulator domain 56 172 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu08g0179 172 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 33 172 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Clacu08g0179 172 Gene3D Transcriptional Coactivator Pc4; Chain A 50 172 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu08g0179 172 Pfam Whirly transcription factor 65 172 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0179 Clacu-Chr8:3600249 Clacu08g1040 Clacu-Chr8:20433900 8.10E-31 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48119 PF08536 Whirly 1.10E-44 CL0609 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0179 K26561 - csv:101219085 286.189