Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0179 ATGATGAAGCTACCGCGCCGGTTGTCCAGGAGTCAGCTATTTGAACAAATTGTGTGTAAGAAAGTTGGTCATGTTGGACATCCTTTGGGGTCGCATCCTTTCTCATCTCGAGTTGGCTTTCCAGATTCGAGACAAAATTTTACTCATACAGTCACAAAGAATGCAAGTGATCGAGTTTATGCTGCTTATAATGTATATAAGGGAAAAGCTGGACTCTCTATGAAGCCTTGCTTGCCAACTTTCACTAAATTAGAGTCTGGGAGTCTTGTAATTGATCGACGTGGCTCAGTAATGCTGTCATTCTTTCCTGCCATAGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCATTGTCTCCAACAGAAGTTGGTACTTTAATCAGTTTGGGTCCCAGAGATTCATGCGAATTCTTCCATGACCCTGGAATGCTTTCCAGTACTGCTGGTCAAGTAAGGAAGAGCTTAACAATTAAGGCCCATGCAGATGGCAATGGCTATTTCATCTCTTTGA 517 42.94 MMKLPRRLSRSQLFEQIVCKKVGHVGHPLGSHPFSSRVGFPDSRQNFTHTVTKNASDRVYAAYNVYKGKAGLSMKPCLPTFTKLESGSLVIDRRGSVMLSFFPAIGERKYDWTKKQLFALSPTEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLTIKAHADGNGYFISL 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3600249 3613122 - ClG42_08g0017900.10 Clacu08g0179 254521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0179 172 SUPERFAMILY ssDNA-binding transcriptional regulator domain 56 172 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu08g0179 172 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 33 172 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Clacu08g0179 172 Gene3D Transcriptional Coactivator Pc4; Chain A 50 172 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu08g0179 172 Pfam Whirly transcription factor 65 172 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0179 K26561 - - csv:101219085 286.189
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0179 Clacu-Chr8:3600249 Clacu08g1040 Clacu-Chr8:20433900 8.10E-31 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g1040 . 71 274 Whirly Transcription Factor Family AT1G14410 74.8 7.4e-92 334.0
Clacu08g0179 . 56 172 Whirly Transcription Factor Family AT1G71260 70.1 4.0e-44 175.3
Clacu08g1040 . 57 274 Whirly Transcription Factor Family AT2G02740 72.1 1.9e-90 329.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012554 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48119 PF08536 Whirly 1.10E-44 CL0609 Clacu TF