Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0197 ATGTCCACATCCACCAGAACCAACCATATAGCTTCTACATTCTCCACATCTAATCTTCACCATTTGCACAATTTCTATTCTTTCCTTCATCATTCATTCCCTCCGGCCATGGCTTCTTTGGCAGCCTCCACCGCCGCCGCCTCCCTTGGCGTCTCCGAAATGCTGAGAAATCCTCTCAGCTTCTCCGGTGCCTCCGCTAGGTCAGCTCCCTCTGCTTCTAGCCCAGCTACCTTCAAAACCGTTGCGCTTTTCGGGAAGAAGCCTGCCGCACCATCCAAGCCAAAGCCCTCTGCCGTCTCCCCAGTCAACGACGAGCTCGCCAAGTGGTATGGTCCGGACAGAAGGATTTTCTTGCCGGAAGGGCTGTTGGACCGATCGGAGATCCCTGAGTATTTGAACGGAGAAGTCCCCGGCGACTATGGTTACGATCCCTTTGGACTCAGCAAGAAGCCAGAGGACTTCAGCAAATACCAAGCGTTTGAGTTGATTCATGCAAGATGGGCCATGCTTGGAGCTGCTGGTTTCATCATCCCTGAGGCCTTCAACAAATTCGGAGCCAACTGCGGTCCCGAGGCTGTCTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGAAATACATTGAATTACTTTGGAAACAACATTCCCATCAACCTCATCGTCGCGGTCATTGCTGAGGTTGTTCTTGTTGGTGGCGCTGAATATTACAGAATCATCAATGGCTTGAACTTTGAGGACAAGCTTCACCCCGGAGGGCCGTTCGACCCATTGGGGTTAGCAGACGACCCGGACCAAGCAGCGATTTTGAAGGTGAAGGAGATCAAGAATGGGAGATTGGCAATGTTTGCAATGCTAGGGTTTTACTTCCAAGCATATGTGACAGGAGAAGGGCCAGTGGAGAACTTGGCAAAGCATTTGAGTGATCCTTTTGGAAACAACTTGCTCACAGTCATTTCTGGGAATGCTGAAAGACTTTCGTCCGTCACCTCCAACCGTCCATTCATTTGTCAGCTCGAAGGAGTCCAGCAGCTCGCGTTCAACTGTTTGTTCATTCCAGATCAGCTCGAAGGAATCCACCAGTCTGTCACCTACAACCATTCGTTTGTTCCAGATCATCCGTCCTTTCCAGATCTCGTGTTTGTTTCAAATCATCCATCCGTTCCAGATCTGCTCACATTCATCGTTCCAGATCTGACCTTCGGCTTCTGTATTCGCGATTTGTCGATTGCTCGCATTCGTCGATTTGTCATCCGTTGTTCCAGATCATCAACTTGTCATCCTCCATTCCAAATCAGACAGACCGTTCCAAATCTAAGCTGTGGGTTGTTTGAGTTGTTTGATTGCTCGAAAGGTAAAATTTTCTTTTGA 1365 49.23 MSTSTRTNHIASTFSTSNLHHLHNFYSFLHHSFPPAMASLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSPATFKTVALFGKKPAAPSKPKPSAVSPVNDELAKWYGPDRRIFLPEGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERLSSVTSNRPFICQLEGVQQLAFNCLFIPDQLEGIHQSVTYNHSFVPDHPSFPDLVFVSNHPSVPDLLTFIVPDLTFGFCIRDLSIARIRRFVIRCSRSSTCHPPFQIRQTVPNLSCGLFELFDCSKGKIFF 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3969328 3973307 - ClG42_08g0019700.10 Clacu08g0197 254539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0197 454 Gene3D Chlorophyll a/b binding protein domain 116 327 - -
Clacu08g0197 454 Pfam Chlorophyll A-B binding protein 129 290 IPR022796 -
Clacu08g0197 454 SUPERFAMILY Chlorophyll a-b binding protein 108 317 - -
Clacu08g0197 454 FunFam Chlorophyll a-b binding protein, chloroplastic 116 327 - -
Clacu08g0197 454 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 55 315 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2513 Clacu-Chr1:35489876 Clacu08g0197 Clacu-Chr8:3969328 4.30E-55 dispersed
Clacu08g0197 Clacu-Chr8:3969328 Clacu10g1178 Clacu-Chr10:24465764 1.90E-55 dispersed
Clacu08g0197 Clacu-Chr8:3969328 Clacu02g1889 Clacu-Chr2:32393600 1.50E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0197 K08916 - csv:101218137 521.161