Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0218 ATGGATACCAAAGGTCGACTCATTGCTGGTTCTCATAACAGAAATGAGTTTGTTCTCATCAATGCTGATGAGGTTGCAAGAGTGACATCTGTGAAAGAGTTAAGTGGGCAAATTTGCCAGATCTGTGGGGATGAGATAGAAATCACCGTAGATGGAGAGCCATTTGTTGCCTGTAATGAATGTGCCTTTCCAGTTTGTAGACCTTGCTATGAATATGAAAGAAGAGAGGGCAATCAAGCTTGTCCTCAGTGCAAAACCAGATACAAGCGTCTCAAAGGCAGTCCTCGGGTTGAAGGTGATGAAGAAGAAGATGATATCGATGATCTTGAGAATGAGTTTGATATTGCAAACAAGGATCCTAGCAGTGCATCTGAGGCAATGCTTTATCCTCACCTTGCCGTTGGGCGAGGTTCTCATGTTAATGGTTCTGGAAATATGGCTTCTGACCTTGACTCCTCATCCGTTCCAACTGATATCCCTCTCCTGACCTATGGCCAAGAGGATGCTGGAATTTCCTCCGATAAGCATGCTCTAATTATTCCTCCTTTTATTAGCCGTGGAAAAAAGGTCCATCCAGCGCCATTCACTGATTCCATGTCTGCCAATCCAAGGCCAATGGATCCGAAGAAGGATTTAGCTGTGTATGGATATGGAACTGTTGCGTGGAAGGAAAGAATGGAAGACTGGCGGAAGAAACAAAATGAAAGACTTCAAGTAATTAAGCATGAGGGTGGAGGTGGAAAAGGTGATGACGAGCTCGATGATACAGATTTGCCTATGATGGATGAAGGGAGGCAACCGCTTTCCAGAAAACTGCCTATCCCCTCGAGCAAGATAAACCCATACAGAATGATAATCGTACTTCGTATTGTCATCCTTTGCCTCTTTTTCCACTATCGTATTCTTCATCCTGTCCATGAGGCATATGGGCTGTGGTTAACATCAGTAATCTGTGAGATATGGTTTGCTGCATCATGGATATTGGATCAGTTCCCAAAATGGTGCCCCATTGTCCGAGAAACTTACCTTGATCGGCTGTCGTTAAGATACGAAAAAGATGGCAAGCCATCAGAATTGGCTTCTATAGACGTTTATGTCAGTACAGTGGATCCATTGAAGGAGCCTCCTCTCATCACAGCAAACACCGTCCTATCTATTCTTGCCGTCGATTATCCGGTAGACAAGGTTTCATGCTATGTTTCTGATGATGGTGCTGCGATGCTTACTTTTGAAGCCCTTTCGGAAACTTCTGAGTTTGCAAGAAAGTGGGTTCCTTTCTGCAAGAAGTTCAATATTGAACCTCGTGCCCCAGAATGGTATTTTGCCCAGAAGGTTGACTATTTGAAAGACAAAGTTGATCCAACATTTGTCAGGGAACGACGTGCAATGAAGAGGGACTACGAAGAATTTAAAGTTCGAATCAATGGGCTTGTTGCCATGGCTCAAAAAGTTCCTGAAGATGGTTGGACAATGCAGGATGGAACTCCATGGCCCGGGAACAATGTCCGGGATCATCCTGGAATGATTCAGGTATTCCTCGGTCAAAACGGTGTCCGTGACTTGGAGGGAAATGAATTACCTCGTCTAGTGTATGTATCTCGTGAGAAGAGGCCAGGATTTGATCACCACAAGAAAGCCGGTGCCATGAATTCTCTGGTGCGTGTCTCGGCAATTATCTCGAATGCTCCATACATTTTGAACGTTGATTGTGATCACTACATTAACAACAGCAAGGCACTTAGAGAAGCAATGTGTTTCATGATGGACCCAATTTCGGGAAAAAGAATATGCTATGTGCAGTTTCCACAAAGATTTGATGGCATTGATAGGCACGATCGATACTCTAATCGCAATGTTGTATTCTTCGATATCAACATGAAAGGATTGGATGGTATTCAAGGGCCGATATATGTCGGAACTGGATGTGTCTTTAGGAGGCAGGCTCTTTATGGCTATGATGCCCCTGCTAAGAAGAAAGCACCAAGAAGGACTTGCAACTGTCTTCCAAAATGGTGCTGTTGTTGCTGTGGAACTAGAAAGAAGACTAAAACAAAGACCAGTGATAAAAAGAAATTAAAGACCAAAGATACGTCGAAACAGATTCACGCACTTGAAAATATTGAAGAAGGAATTGAAGGAATAGATAACGAGAAATCATCTCTGATGCCCCAAGTTAAGTTTGAGAAGAAGTTTGGGCAATCACCAGCATTCATTGCTTCCACACTCATGGAAGATGGTGGCGTGCCTGGAGGAGGGACTTCTGCTTCGTTGTTGAAAGAAGCCATCCACGTAATCAGTTGTGGTTATGAAGATAAATCCGAGTGGGGTAAAGAGGTAGGGTGGATATATGGGTCTGTTACAGAGGATATTTTAACAGGTTTCAAGATGCATTGCCATGGATGGAGATCAGTTTATTGCATTCCTAAAAGGCCAGCATTCAAGGGTTCAGCTCCTATTAACTTGTCTGATCGTCTACACCAAGTTCTTCGGTGGGCACTTGGGTCAGTTGAAATTTTGTTGAGTAGGCACTGTCCAATATGGTACGGATATGGATGTGGTTTGAAGTGGCTCGAGCGTTTCTCATACATAAACTCCGTTGTTTATCCATTGACGTCAGTTCCACTGATTGCTTATTGTACGCTGCCAGCTGTCTGCCTGCTTACAGGGCAGTTTATCGTCCCTGAGCTAAGCAACTATGCCAGTATAATTTTCATGGCACTCTTCATCTCTATAGCAGCAACCGGACTGTTCAGGATTCTGATTTAG 2766 43.75 MDTKGRLIAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLENEFDIANKDPSSASEAMLYPHLAVGRGSHVNGSGNMASDLDSSSVPTDIPLLTYGQEDAGISSDKHALIIPPFISRGKKVHPAPFTDSMSANPRPMDPKKDLAVYGYGTVAWKERMEDWRKKQNERLQVIKHEGGGGKGDDELDDTDLPMMDEGRQPLSRKLPIPSSKINPYRMIIVLRIVILCLFFHYRILHPVHEAYGLWLTSVICEIWFAASWILDQFPKWCPIVRETYLDRLSLRYEKDGKPSELASIDVYVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFAQKVDYLKDKVDPTFVRERRAMKRDYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDLEGNELPRLVYVSREKRPGFDHHKKAGAMNSLVRVSAIISNAPYILNVDCDHYINNSKALREAMCFMMDPISGKRICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKAPRRTCNCLPKWCCCCCGTRKKTKTKTSDKKKLKTKDTSKQIHALENIEEGIEGIDNEKSSLMPQVKFEKKFGQSPAFIASTLMEDGGVPGGGTSASLLKEAIHVISCGYEDKSEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSVPLIAYCTLPAVCLLTGQFIVPELSNYASIIFMALFISIAATGLFRILI 921
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4297411 4303665 - ClG42_08g0021800.10 Clacu08g0218 254560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0218 921 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Clacu08g0218 921 CDD mRING-HC-C4C4_CesA 37 87 - -
Clacu08g0218 921 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 508 654 IPR029044 -
Clacu08g0218 921 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Clacu08g0218 921 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 871 IPR029044 -
Clacu08g0218 921 Pfam Cellulose synthase 362 918 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Clacu08g0218 921 Pfam Zinc-binding RING-finger 30 105 IPR027934 -
Clacu08g0218 921 Coils Coil 99 119 - -
Clacu08g0218 921 FunFam Cellulose synthase 21 112 - -
Clacu08g0218 921 SUPERFAMILY RING/U-box 28 107 - -
Clacu08g0218 921 FunFam Cellulose synthase 479 653 - -
Clacu08g0218 921 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 282 918 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1638 Clacu-Chr1:28513125 Clacu08g0218 Clacu-Chr8:4297411 9.80E-84 dispersed
Clacu08g0218 Clacu-Chr8:4297411 Clacu11g1317 Clacu-Chr11:22466230 4.40E-293 dispersed
Clacu08g0218 Clacu-Chr8:4297411 Clacu02g0924 Clacu-Chr2:11765247 1.00E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0218 K10999 - csv:101214061 1778.07