Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0395 GTTTACTCGGTGAACTTCGCCATTAAAAACAACTGTACTTTTCCAATCTGGCCCGGAGCATTGACTGGTGCCGGATCTCAACTATCCACCACCGGCTTCAAATTACTCCCCGGATCGACGGCGACGGTAAACGTCTCTTCCCCGTGGTCCGGGAGGTTCTGGGCTCGAACTCTTTGCTCCACCGATACAACTGGAAAATTCTCCTGCGGAACTGCCGATTGTGGCTCCGGCCAAGTCTCCTGCAACGGCGCCGGCGCAATCCCACCGGCAAGCCTGGTTGAGTTCACAACAGCGGCGAATGGCGGCCAAGATTTCTTCGACATCAGCCTTGTGGATGGCTTCAATTTGGCCGTTTCAGTGAACCCAATAGGCGGATTAGATGGGTGTAAAGCGGTGGTTTGTGCCGGAAATGTGAACGCTGTTTGTCCACCGGAATTAGCCATTAAAGGAGAAGGCGGTGAAGTTATAGCATGTAAAAGTGCTTGTATGGGTTTTAATAAGCCGGAATATTGTTGCAGCGGTGAGTATGATCAGCCGGAAACTTGTCCGCCGACGGATTATTCGAAGATATTCAAGAATCAGTGTCCTCAAGCTTATAGTTATGCATATGACGATAAGACTAGTACTTTTACTTGCTCAGGTGGGCCTAATTATTCCATCACATTTTGTCCTTCATCTTCTTAA 684 49.12 VYSVNFAIKNNCTFPIWPGALTGAGSQLSTTGFKLLPGSTATVNVSSPWSGRFWARTLCSTDTTGKFSCGTADCGSGQVSCNGAGAIPPASLVEFTTAANGGQDFFDISLVDGFNLAVSVNPIGGLDGCKAVVCAGNVNAVCPPELAIKGEGGEVIACKSACMGFNKPEYCCSGEYDQPETCPPTDYSKIFKNQCPQAYSYAYDDKTSTFTCSGGPNYSITFCPSSS 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5152252 5152937 + ClG42_08g0039500.10 Clacu08g0395 254737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0395 227 PRINTS Pathogenesis-related protein signature 31 40 IPR001938 -
Clacu08g0395 227 PRINTS Pathogenesis-related protein signature 52 63 IPR001938 -
Clacu08g0395 227 PRINTS Pathogenesis-related protein signature 104 120 IPR001938 -
Clacu08g0395 227 PRINTS Pathogenesis-related protein signature 5 17 IPR001938 -
Clacu08g0395 227 PRINTS Pathogenesis-related protein signature 214 223 IPR001938 -
Clacu08g0395 227 ProSiteProfiles Thaumatin family profile. 3 224 IPR001938 -
Clacu08g0395 227 SMART tha2 6 224 IPR001938 -
Clacu08g0395 227 PANTHER OS03G0233200 PROTEIN 4 224 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Clacu08g0395 227 Pfam Thaumatin family 10 224 IPR001938 -
Clacu08g0395 227 FunFam THAUMATIN-LIKE PROTEIN 1 4 224 - -
Clacu08g0395 227 PIRSF PR5 1 227 IPR001938 -
Clacu08g0395 227 SUPERFAMILY Osmotin, thaumatin-like protein 5 225 IPR037176 -
Clacu08g0395 227 CDD TLP-PA 6 223 - -
Clacu08g0395 227 Gene3D Thaumatin 4 224 IPR037176 -
Clacu08g0395 227 ProSitePatterns Thaumatin family signature. 65 81 IPR017949 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0170 Clacu-Chr8:3315926 Clacu08g0395 Clacu-Chr8:5152252 3.20E-113 dispersed
Clacu08g0395 Clacu-Chr8:5152252 Clacu10g1961 Clacu-Chr10:33145580 2.10E-74 dispersed
Clacu08g0395 Clacu-Chr8:5152252 Clacu04g1002 Clacu-Chr4:24222524 1.00E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0395 - - - 0.0