Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0404 ATGGACGGCCCCCCTGCGGGCGATATCTGTTCCATCTGCCATGGAAGATTCAACACCCCTTGCCAAGCTAATTGCTCGCACTGGTTCTGCGGAAAGTGTATAATGCTTGTCTGGGATCATGGATCACCATTTCAGCCATGTAAATGCCCCTTATGCCGTCGACAAATCTCTTTATTAGTTCCTTCTGAGGTTTCACCAATTCAGCAAGGTGACCCAGAGGTTGCACGCGTTCTTAACAATATAAGGACTTATAACCGTCATTTTGGTGGCAACTCAACTGGTTTTAGTCAGCAATTGCAGGACCTTCCTTTTCTCCTACGGAGGCTGCTTCGGGAACTCCTTAATCCACAGAGATCTCTTCCTCTTGTCATTAGAACACGTGTTTACATTGCAATGGTACTGAGTGTAGTCTACGCTGTGAGTCCCATCGATATCATACCAGAAGCATTACTAGGATTATTTGGATTGATGGATGATATCTTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATATATCGATCGGTGTTGCTTCATTTTGTGTTCGGGAATGTGAAGCTTGAGAACCACAAAAACTGTGTTTGGAAAATAGCCACTGCAGATGTCTGCTCGCGTTTATCACCTGAGTTTACACACGAATCAATTGGAGTTGTGGTATGTGATTTCCCCTTGCATTCCCTTGTTGGTATCCTCATTCTCGTTGAGGATTACATTGAGGTTTTAAAACTAGTGGATCCATTGCAGGGGTTTCTTATGTTGTTGGGCGACGCCGTCGCAGGTGAGTGTTGGGAGGTAATGCTTGACGAAGGAGTTGACAAAAGCTTTAGACGACGGTTTCGCCATGCCCATTCAACCCCCACCTCCACCCTAATTGACACAAGCATTATAACACCAACACCCATACTCGAGATGCAACAGAACGGTGAGGAAGATGGGGCTATGTGGCCGTTAAAGTTGAAGTAG 966 45.45 MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLLHFVFGNVKLENHKNCVWKIATADVCSRLSPEFTHESIGVVVCDFPLHSLVGILILVEDYIEVLKLVDPLQGFLMLLGDAVAGECWEVMLDEGVDKSFRRRFRHAHSTPTSTLIDTSIITPTPILEMQQNGEEDGAMWPLKLK 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5325968 5346955 - ClG42_08g0040400.10 Clacu08g0404 254746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0404 321 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Clacu08g0404 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 102 IPR013083 -
Clacu08g0404 321 Pfam Protein of unknown function (DUF1232) 130 164 IPR010652 -
Clacu08g0404 321 SMART ring_2 10 52 IPR001841 -
Clacu08g0404 321 SUPERFAMILY RING/U-box 8 59 - -
Clacu08g0404 321 CDD RING-HC_RNF113A_B 4 61 - -
Clacu08g0404 321 ProSiteProfiles Zinc finger RING-type profile. 10 53 IPR001841 -
Clacu08g0404 321 PANTHER UNCHARACTERIZED 3 180 IPR038896 GO:0061630(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0404 Clacu-Chr8:5325968 Clacu08g0406 Clacu-Chr8:5390919 2.10E-08 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0404 K15707 - rcu:8281372 254.603