Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0407 ATGGTTGAGACAATAGATATGGAGACAAAAGCAATGGGATGTGGGATAACTTTACTAATTGTTATGTGCTACGCCCACCTGAACAGGTTTCAATTTACCACAGAAAAACTTCTCAAATCCCCAGAACTCAAAGAGAACTCAAATTCCTCACCGGAGCCATCAATGGCCGCCCTTCACCAAACCGCCGCCTCTCTCCAGGCCAAGCTCCTTCCAACCGTCCGATTCTCCCGAACCACTCCCGTAAACCTCTCCTTCTCCGCCACTTTTCCTTCCCGCGGACTCCGCCTCAGCCACCACCGCTCTCACGGCGGCGCTAAAATGTCCGCCACAGCCGCTGGAAGCTACGCCGCAGCGCTGGCCGAAGTCGCTTCCTCGAATAACACGCTGGAAGCCACAAGCGGCGACGTGGAGAAGATTGAGAGCTTGTTCGCGGATCCGCAGGTGCTCAATTTCTTCGCGAACCCAACGATTAGCATCGAGAAGAAACTGGCAGTGGTGGATGAAATCGCTTCGTCCTCATCTCTACAGCCGCATTCAGCGAATTTCTTGAAGATCCTGGTGGACGCGAAGAGGATCGACATCCTGAAGGAGATCGTGACGGAGTTTGAATTGGTATACAACAAGATTACGAACACGGAGCTTGCGGTGGTGAGTTCGGTTGTGCAGTTGGAGCAGCAGCATTTGGCGCAGATCGCGAAGCAGGTGCAGAAATTGAGCGGAGCGAAGAATGTGAGGATAAAGACGCAGATCGATCCGAGTCTGGTGGCTGGATTTACAGTCAGGTTTGGGAATTCTGGATCGAAACTTATTGATTTGAGCGTCAAGAAACAGCTTGAGGAAATTGCTGCTCAGCTTGATCTTGGCAATATTCAACTGGCTGTATGA 885 51.41 MVETIDMETKAMGCGITLLIVMCYAHLNRFQFTTEKLLKSPELKENSNSSPEPSMAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATFPSRGLRLSHHRSHGGAKMSATAAGSYAAALAEVASSNNTLEATSGDVEKIESLFADPQVLNFFANPTISIEKKLAVVDEIASSSSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5397851 5400153 - ClG42_08g0040700.10 Clacu08g0407 254749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0407 294 Hamap ATP synthase subunit delta [atpD]. 107 287 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Clacu08g0407 294 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 108 211 IPR026015 -
Clacu08g0407 294 PANTHER ATP SYNTHASE DELTA CHAIN 69 285 IPR000711 GO:0009535(PANTHER)|GO:0009772(PANTHER)|GO:0009773(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(PANTHER)|GO:0046933(InterPro)|GO:0046933(PANTHER)
Clacu08g0407 294 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 244 263 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Clacu08g0407 294 Pfam ATP synthase delta (OSCP) subunit 112 285 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Clacu08g0407 294 PRINTS ATP synthase delta subunit signature 242 257 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Clacu08g0407 294 PRINTS ATP synthase delta subunit signature 260 278 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Clacu08g0407 294 PRINTS ATP synthase delta subunit signature 180 191 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Clacu08g0407 294 PRINTS ATP synthase delta subunit signature 191 205 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Clacu08g0407 294 PRINTS ATP synthase delta subunit signature 111 130 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Clacu08g0407 294 NCBIfam ATP synthase F1 subunit delta 112 285 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Clacu08g0407 294 Gene3D - 111 203 IPR026015 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0407 Clacu-Chr8:5397851 Clacu09g0415 Clacu-Chr9:3676750 1.30E-07 dispersed
Clacu08g0407 Clacu-Chr8:5397851 Clacu10g1236 Clacu-Chr10:25197307 5.10E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0407 K02113 - csv:101211740 398.282