Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0411 ATGACGACGCTCTCTGTGACATCTGATGTATGTGACGACGGTGCAGCTGATATCAACGGCGGCTTAAGCCTTGTTCTTCGGGCAACCGTAGCAGCAATATGCGCGAGGCAGTCGGTCTATGTCTTTGCCTCCGAGTCTCTGATTCCCTTCTCCATTTTGGCCTCTCTCTCTCTTCTATCTCTCTCTCAGTTATTGTACCCCGAGAGACCTATGAACATGCTAGGTTCACATGAGGAGGAAGATGATCATGGTGAGGTCTTCCTTGATGAAGCTGACATAATCAATGAAATTCCAGTTGATGAGGAAGATCTTCCTGATGCTGTTGATGAAGAGGGCTCCGATGATGAATATTTTGATGAGGCTGATGATTCCGTTCATACTTTTACTGGCCATACTGGTGAGGTTTACACAGTGGTCTGTAGTCCAATAGATGCCACATTAGTTGCAACAGGGGGTGGAGATGACAAAGGATTTATGTGGAAGATTGGCCGAGGAGATTTTGCCCAGGAGCTTAGTGGTCACAAGGATTCCGTATCTAGCTTAGCATTTAGTGCAGATGGACAACTACTTGCATCAGGGAGTTTTGATGGGCTTATCCAAATTTGGGATACTTCATCTGGGAAACTTAAATGTGCACTTGAAGGCCCTGGAGGGGGAATTGAGTGGGTAAGGTGGCATCCAAGAGGACATCTGGTTTTGGCTGGTTCTGAAGATTCCACCGCTTGGATGTGGAATGCTGATAGAGGTGTCTATCTTAATATATTTTCTGGTCACGGTGCTAGTGTTACATGCGGTGACTTTACTCCGGATGGTAAAATGATATGCACGGGTTCTGATGATGCAACGATGAGGATATGGAATCCAAGAAGTGGAGAAAATATTCATGTCGTGAGAGGTCATCCCTATCATACCGAAGGATTGACTTCTCTAGCACTCACTTCTGATTCAACCCTTGCTCTTACTGGTTCAAAAGATGGTTCTGTTCATATTGTGAATATAGCAACTGGAAAGGTAGTGAATTCTCTGGTTTCCCATTCAGATTCAATTGAATGCATCGGTCTAGCACCAAGCTCCCCTTGGGCTGCAACTGGAGGAATGGATCAGAAGCTCATCATTTGGGATCTTCGACAATCAACACCACGCAGTACATGCGAGCACGAGGATGGAGTAACATGTCTTACTTGGATTGGCACATCGAGATACCTTGCAACTGGATGTGTTGATGGTCGAGTACGAATGTGGGATAGCCTCTCCGGAGAATGTGTTAGAACCTTCACCGGCCACTCCGATGCCATCCAATCTCTCGCGGTGTCTGCCAACAATGAGTACCTTGTTTCTGTTGCTCTTGATAATACAGCTCGGATTTTTGAGATTGCAGAGTATCATTGA 1389 45.86 MTTLSVTSDVCDDGAADINGGLSLVLRATVAAICARQSVYVFASESLIPFSILASLSLLSLSQLLYPERPMNMLGSHEEEDDHGEVFLDEADIINEIPVDEEDLPDAVDEEGSDDEYFDEADDSVHTFTGHTGEVYTVVCSPIDATLVATGGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAFSADGQLLASGSFDGLIQIWDTSSGKLKCALEGPGGGIEWVRWHPRGHLVLAGSEDSTAWMWNADRGVYLNIFSGHGASVTCGDFTPDGKMICTGSDDATMRIWNPRSGENIHVVRGHPYHTEGLTSLALTSDSTLALTGSKDGSVHIVNIATGKVVNSLVSHSDSIECIGLAPSSPWAATGGMDQKLIIWDLRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDSLSGECVRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEIAEYH 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5552038 5576317 + ClG42_08g0041100.10 Clacu08g0411 254753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0411 462 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 76 460 IPR051179 -
Clacu08g0411 462 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 122 449 IPR011047 -
Clacu08g0411 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 128 170 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 383 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 425 462 - -
Clacu08g0411 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 341 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 171 208 - -
Clacu08g0411 462 ProSitePatterns Trp-Asp (WD) repeats signature. 190 204 IPR019775 -
Clacu08g0411 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 213 254 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 ProSitePatterns Trp-Asp (WD) repeats signature. 361 375 IPR019775 -
Clacu08g0411 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 383 424 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 255 292 - -
Clacu08g0411 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 171 212 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 425 462 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 342 376 - -
Clacu08g0411 462 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 383 415 - -
Clacu08g0411 462 Gene3D - 121 460 IPR015943 GO:0005515(InterPro)
Clacu08g0411 462 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Clacu08g0411 462 PRINTS G protein beta WD-40 repeat signature 402 416 IPR020472 -
Clacu08g0411 462 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Clacu08g0411 462 FunFam Angio-associated migratory cell protein-like protein 121 460 - -
Clacu08g0411 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 296 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 CDD WD40 169 457 - -
Clacu08g0411 462 SMART WD40_4 248 287 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 SMART WD40_4 377 415 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 SMART WD40_4 418 457 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 SMART WD40_4 206 245 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 SMART WD40_4 121 161 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 SMART WD40_4 164 203 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 SMART WD40_4 335 374 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 SMART WD40_4 290 332 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 Pfam WD domain, G-beta repeat 336 374 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 Pfam WD domain, G-beta repeat 208 245 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 Pfam WD domain, G-beta repeat 419 456 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 Pfam WD domain, G-beta repeat 251 287 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 Pfam WD domain, G-beta repeat 168 203 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 Pfam WD domain, G-beta repeat 292 330 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 Pfam WD domain, G-beta repeat 382 415 IPR001680 GO:0005515(InterPro)
Clacu08g0411 462 Pfam WD domain, G-beta repeat 124 160 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0411 K24725 - - csv:101211245 776.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0411 Clacu-Chr8:5552038 Clacu08g0414 Clacu-Chr8:5630028 3.70E-06 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1306 . . . . . . . . . . . Cma09g01283 . . . . . . . . . . . . Cla08g00264 Cam08g0704 . Cco08g0349 Clacu08g0411 . Cre08g0236 . . . . . . . . . . . Bda13g01432 . . . . . . Cmo09g01240 . . . Car09g01096 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004733 3 1 1 2 1 1 2 2 0 1 1 1 2 1 1 3 1 1 2 1 1 2 1 1 1 1 1 3 1 2 42