Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0459 ATGGAGATGGAGCAGTTCAAGGTTTTGGCTCTGGGTTTCGTCTCTTTGATCTTGCTGGTTCCTCCACTATGGCTCGTTTCTGCTAACATGGAAGGTGATGCTTTGCATAGCCTAAGAACCAGCTTGCAGGATCCTAACAATGTCTTGCAGAGTTGGGATCCCACTCTCGTCAATCCCTGTACATGGTTTCATGTTACATGCAATAATGATAATAGTGTCATAAGAGTTGATCTTGGAAATGCAGCTTTATCAGGCACACTTGTTCCACAGCTTGGCTTGCTAAAAAATTTGCAGTATCTAGAGCTCTACAGTAATAACATAAGTGGAGTAATTCCGAATGATCTGGGGAATCTGACTAGTTTGGTGAGCTTAGATCTTTATTTGAACAGATTTTCGGGTCCAATTCCAGACACATTGGGCAAGCTGTCAAAACTACGATTTCTCCGACTGAACAACAACAGCTTATCAGGCCCCATTCCTATGTCATTGACTAATATTTCATCCCTTCAAGTGTTGGATCTATCAAATAACCATCTCTCAGGCCCGGTTCCAGATAACGGTTCCTTCTCCTTATTCACCCCCATCAGTTTTGCCAACAACTTGGATCTTTGTGGCCCTGTTACTGGCCGTCCTTGCCCTGGATCTCCTCCATTTTCTCCTCCTCCACCATTTGTTCCACCGCCACCTATATCTTCACCAGGAGGGAATAGTGCTACTGGAGCTATTGCTGGTGGAGTTGCTGCAGGTGCTGCTTTACTTTTTGCAGCTCCAGCAATTGCATTTGCATGGTGGCGTCGTAGGAAACCCCAAGAAGTTTTCTTTGATGTTCCTGCCGAAGAGGATCCTGAAGTGCATCTGGGACAGCTTAAAAGATTTTCACTAAGAGAACTACAAGTGGCAACTGATAGTTTTAGTAACAAGAACATACTTGGTAGGGGTGGATTTGGCAAAGTCTATAAAGGTCGATTGGCAGACGGTTCTTTAGTAGCTGTAAAAAGACTTAAGGAAGAACGTACACCAGGTGGAGAGCTGCAGTTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGGAACCTGCTACGGCTACGTGGGTTTTGCATGACGCCAACTGAACGACTTCTTGTTTACCCCTACATGGCCAATGGAAGTGTTGCGTCTTGCTTAAGAGAACGACCACCATCCCAACCACCTCTTGATTGGAGAACGAGAAAGCGAATTGCATTGGGATCTGCGAGAGGGCTGTCTTATTTGCATGATCACTGTGATCCGAAGATTATTCATCGTGATGTAAAAGCTGCAAATATTTTGCTGGATGAGGAGTTTGAAGCTGTTGTAGGGGACTTTGGGTTGGCCAAACTTATGGATTACAAAGATACTCATGTCACCACTGCAGTACGTGGTACGATTGGACATATAGCTCCTGAGTACCTTTCCACTGGGAAATCTTCTGAGAAAACAGATGTTTTCGGGTATGGTATCATGCTTTTAGAGCTTATCACTGGTCAAAGGGCTTTCGATTTGGCTCGACTTGCCAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTCCTGAAAGAGAAGAAGTTAGAGATGCTGGTTGACCCTGATCTTCAGAATAATTATGTAGAATCTGAGGTAGAACAGTTGATTCAAGTTGCCTTACTCTGCACACAAGGCTCCCCGATGGACCGACCGAAGATGTCCGAGGTGGTGAGAATGCTTGAAGGTGATGGATTGGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAGATCCTTCGGCAAGAAATCGATCTATCGCCCCATCCAAATTCCGATTGGATTGTTGATTCAACTGAAAATCTACATGCAGTTGAGCTGTCGGGTCCAAGATGA 1884 44.9 MEMEQFKVLALGFVSLILLVPPLWLVSANMEGDALHSLRTSLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQLGLLKNLQYLELYSNNISGVIPNDLGNLTSLVSLDLYLNRFSGPIPDTLGKLSKLRFLRLNNNSLSGPIPMSLTNISSLQVLDLSNNHLSGPVPDNGSFSLFTPISFANNLDLCGPVTGRPCPGSPPFSPPPPFVPPPPISSPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEVFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWRTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYVESEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEILRQEIDLSPHPNSDWIVDSTENLHAVELSGPR 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7191733 7201217 + ClG42_08g0045900.10 Clacu08g0459 254801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0459 627 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Clacu08g0459 627 FunFam Somatic embryogenesis receptor kinase 1 27 214 - -
Clacu08g0459 627 SUPERFAMILY Protein kinase-like (PK-like) 283 579 IPR011009 -
Clacu08g0459 627 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515(InterPro)
Clacu08g0459 627 Pfam Leucine Rich Repeat 120 142 IPR001611 GO:0005515(InterPro)
Clacu08g0459 627 Pfam Leucine Rich Repeat 144 165 IPR001611 GO:0005515(InterPro)
Clacu08g0459 627 Pfam Leucine Rich Repeat 168 186 IPR001611 GO:0005515(InterPro)
Clacu08g0459 627 FunFam Somatic embryogenesis receptor-like kinase 1 381 598 - -
Clacu08g0459 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g0459 627 SUPERFAMILY L domain-like 32 195 - -
Clacu08g0459 627 Gene3D Transferase(Phosphotransferase) domain 1 381 598 - -
Clacu08g0459 627 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Clacu08g0459 627 SMART serkin_6 304 578 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0459 627 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524(InterPro)
Clacu08g0459 627 ProSiteProfiles Protein kinase domain profile. 304 591 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0459 627 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 627 - -
Clacu08g0459 627 CDD STK_BAK1_like 310 581 - -
Clacu08g0459 627 Gene3D Ribonuclease Inhibitor 27 214 IPR032675 -
Clacu08g0459 627 Pfam Protein tyrosine and serine/threonine kinase 307 578 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g0459 627 FunFam Somatic embryogenesis receptor kinase 1 273 380 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1511 Clacu-Chr1:27209011 Clacu08g0459 Clacu-Chr8:7191733 1.40E-74 dispersed
Clacu06g0181 Clacu-Chr6:2028666 Clacu08g0459 Clacu-Chr8:7191733 1.30E-30 dispersed
Clacu07g0931 Clacu-Chr7:23276338 Clacu08g0459 Clacu-Chr8:7191733 3.50E-241 dispersed
Clacu07g1728 Clacu-Chr7:31994297 Clacu08g0459 Clacu-Chr8:7191733 1.20E-137 dispersed
Clacu07g1729 Clacu-Chr7:32009446 Clacu08g0459 Clacu-Chr8:7191733 8.90E-125 dispersed
Clacu08g0459 Clacu-Chr8:7191733 Clacu09g1579 Clacu-Chr9:27018344 6.70E-192 dispersed
Clacu08g0459 Clacu-Chr8:7191733 Clacu10g0924 Clacu-Chr10:19182386 1.70E-227 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73735 PF00069 Pkinase 9.60E-45 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0459 K13418 - csv:101208695 1141.72