Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0461 ATGTCGATGCTTAACTCCTTCTTCAACAAGGGCTTCAGGGCTGCCCAATGTAAAACACTGCTTAAATTGACAATTCCACGAATAAAGCTGCTGAGGAATCGAAGGGAGATCCAGCTTAAGCAGATGCGCCGAGATATAGCTAAGCTTCTCGAGACAGGACAAGAAGCTACTGCTCGCATTCGGGTAGAGCATATAATCCGAGAAGAGAATATGATGGCTGCTCAGGAAATTCTTGAATTGTTTTGTGAGCTTATTGTTGTTCGCCTTCCAATTATTGAAACACAAAGGGAATGTCCGCTAGACTTGAAAGAAGCGATCTCAAGTGTGTGTTTTGCTGCTCCAAGGTGTGCTGATCTTACAGAGCTTCTCCAGGTTCAGATGCTTTTTGCTGCTAAATATGGGAAGGAATTTGTATCAGCTGCAACTGAGCTCATGCCTAACTGTGGTGTTAATCGTCAGTTGATAGAGCTGCTGTCTGTTCGTGCTCCTTCACCTGAAAAGAAACTGAAGCTGTTAAAGGAAATCGCCGAAGAGCACGACTTAGATTGGAATCCTGCTGAAACTGAAGCTGAGTTTAACAAATCTCCAGAGGATTTGCTTAATGGATCAGCGCAGTTTGTCAGCACATCAAAATTACCCCTTCCGCAAGAGAAACACAATGAAATATCCAATGCTACTCCTGATTTGGCTAGTGCGCCACAACCTGATTCTGATTCTGAATTGGACATGTTAGACTTTCCTGAAGTTCCAAAGATATCGGTATGTCCGCAGCCTACTATAAATGCTGGCTCTGCATCGTCAATGATCCCACCTCCATCTGTGTCGCCACCGCCTGAAACTGATCTTTCTTCATTGAAGTATTCTGGTATTCCTGAAACACCGCCCCAAGATCTACACTTGAAACATGAGGAGGTGACTTCAGTGAGATCTGTTTCACCCAGCAACGATCAAATGAATATTTCTGTTGGTGAAGATAAACAGTTTTTGCCTTTTATTACTCCCCCATCATTGTCATCTTCATTCCCTCATAGACAAACTGATTTGTCGCCACCCTCCGATCCAACGAACCCTGAGGAGATGTTTGGTTTCAAATCACAGATCAAACAGGAGTTAAATTCACCACTACCCTCTGTTTCAAGGACCCCTGAGGAGAAGTTTGGTTTCAGACCACAGTTTGAAGCAGAGATAAATTCACCACTGTCCCCTGTTTCAAGGACAATGAGTGAGATCAATGCAGATGTCGGTGTGGATTTGCAGGACGTGTTGGCAGCTGCACAGGCTGCTGCTGAAACTGCTGAACGTGCTGCCGCTGCAGCTCGCTCTGCAGCTAGTCTTGCAAAGGTTAGAATTGACGAGCTCACAAAGAAAAAGAATGATAAGGACCGTGAAATTAGTTGCGAAAATCCATTCCACGGAGCTACTGCAAGTCCACCAGATCATAAAGAAATATTCCAACTAAACCAACAAGATTCTCTGGGTCATCATTATTCTTCTGCTGTGCCATATTATTCACAAGATTCTTTCCAAGAACATCACAAACTAAGCCGCGATTCAGATGTATCTGATCACAACCAACTCAAGCCAGAGAAATCGGGTTACGATTCCTCTCCCAGTGATTCACCAACTGAACACATAGCAGTCCCTCATCAGCCCCAGAGGCTCCCATCAATGGACGATGACCCATACTTTTCATACCCGAATTTATTTACATCACAGAAACCAAATCCAGGATCTGATCATTCATCAGCATCAGCTGGTGGTTCCTGA 1767 44.26 MSMLNSFFNKGFRAAQCKTLLKLTIPRIKLLRNRREIQLKQMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEILELFCELIVVRLPIIETQRECPLDLKEAISSVCFAAPRCADLTELLQVQMLFAAKYGKEFVSAATELMPNCGVNRQLIELLSVRAPSPEKKLKLLKEIAEEHDLDWNPAETEAEFNKSPEDLLNGSAQFVSTSKLPLPQEKHNEISNATPDLASAPQPDSDSELDMLDFPEVPKISVCPQPTINAGSASSMIPPPSVSPPPETDLSSLKYSGIPETPPQDLHLKHEEVTSVRSVSPSNDQMNISVGEDKQFLPFITPPSLSSSFPHRQTDLSPPSDPTNPEEMFGFKSQIKQELNSPLPSVSRTPEEKFGFRPQFEAEINSPLSPVSRTMSEINADVGVDLQDVLAAAQAAAETAERAAAAARSAASLAKVRIDELTKKKNDKDREISCENPFHGATASPPDHKEIFQLNQQDSLGHHYSSAVPYYSQDSFQEHHKLSRDSDVSDHNQLKPEKSGYDSSPSDSPTEHIAVPHQPQRLPSMDDDPYFSYPNLFTSQKPNPGSDHSSASAGGS 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7239997 7244349 - ClG42_08g0046100.10 Clacu08g0461 254803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0461 588 MobiDBLite consensus disorder prediction 565 588 - -
Clacu08g0461 588 MobiDBLite consensus disorder prediction 224 243 - -
Clacu08g0461 588 MobiDBLite consensus disorder prediction 252 297 - -
Clacu08g0461 588 MobiDBLite consensus disorder prediction 509 529 - -
Clacu08g0461 588 Gene3D - 5 193 IPR042277 -
Clacu08g0461 588 MobiDBLite consensus disorder prediction 509 588 - -
Clacu08g0461 588 MobiDBLite consensus disorder prediction 335 390 - -
Clacu08g0461 588 MobiDBLite consensus disorder prediction 457 479 - -
Clacu08g0461 588 MobiDBLite consensus disorder prediction 335 353 - -
Clacu08g0461 588 Coils Coil 422 442 - -
Clacu08g0461 588 Pfam Regulator of Vps4 activity in the MVB pathway 18 181 IPR005061 GO:0015031(InterPro)
Clacu08g0461 588 MobiDBLite consensus disorder prediction 530 545 - -
Clacu08g0461 588 PANTHER IST1 FAMILY MEMBER 10 575 IPR005061 GO:0008104(PANTHER)|GO:0015031(InterPro)
Clacu08g0461 588 FunFam IST1-like protein isoform A 6 192 - -
Clacu08g0461 588 Coils Coil 32 59 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0461 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2139 Clacu-Chr1:32982186 Clacu08g0461 Clacu-Chr8:7239997 1.00E-66 dispersed
Clacu03g0967 Clacu-Chr3:14167786 Clacu08g0461 Clacu-Chr8:7239997 1.60E-69 dispersed
Clacu03g1623 Clacu-Chr3:29892463 Clacu08g0461 Clacu-Chr8:7239997 7.90E-61 dispersed
Clacu08g0461 Clacu-Chr8:7239997 Clacu09g0212 Clacu-Chr9:1953654 1.10E-23 dispersed
Clacu08g0461 Clacu-Chr8:7239997 Clacu05g2480 Clacu-Chr5:32917979 1.10E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1309 Blo01g01750 Blo12g00768 . Bda03g00412 Bpe02g00192 Bpe04g00378 Bma04g00389 Bma01g02532 . . . . Car01g00848 . . Cpe06g00956 . . . . . . . . Cla08g00312 Cam08g0750 Cec08g0303 . Clacu08g0461 . . . . . Cone20ag0683 . . . . . . Bda11g00852 . . . . . . . Cmo09g01216 . . . Car09g01087 . . . . . . . . . . . . . . . . Lsi08g00258 . Chy03g00282 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006306 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 0 3 1 1 38