Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0468 ATGGGCTGTGCACAAACGAAGCATTCGGTGAGTTCGCCCTCTGGGGGAATTGAGAAGCTGAAATTGGAAAATGGGTATGCTGGGATTGAAGGTTTTCTTGCTCATCGGAGGTCTGTCAGGCAGAGGAGATATGTCGGCAGGGAGTCGTCTGAAGCAGAGAAGCCTCACGGCGGTGATGGCGGCGGCGGGAATGGCCAATTTGGTTCAGAGAAGATTGAGCTAGTGGATGGGTGGCCCAAATGGCTTACTAGCAATATTCCTAAGCATGTGTTGGCTGGCTTGGTACCCAAGAGTGTGGAGGCCTATGACAAGCTTGACAAGGTAGGCCAAGGAAGTTACAGCAATGTGTACAAAGCTCGAGATAGGGAAAGTGGAAAGATTGTTGCCCTTAAGAAGGTCCGTTTTGATACATCAGAACCTGAGAGTGTGAAGTTCATGGCCAGAGAAATTATGATACTCCTGAAACTGGATCACCCCAACATTGTCAAACTTGAAGGATTGGCTACCTCAAGAATGCAGTTCAGTCTTTATCTTGTTTTTGATTTTATGCAGACTGATTTAGCCCGAGTTATTTCCCACCCCGATGTATGCCTTACGGAGCCTCAGGTTAAATGCTATATGCATCAGCTACTCTCTGGTCTGAAGCATTGCCATGATAAGGGGATTTTGCATCGTGATATCAAAGGATCGAACCTGTTAATTGACAAAAATGGGACACTGAAGATTGCCGATTTTGGGCTTGCCATTTTCATCAGTCCAAAGAGGCCTCTTACCAATCGTGTTGTGACTCTTTGGTATCGAGCTCCAGAGCTATTGTTAGGTGCTACAGATTATGGAGTTGGCATTGATCTATGGAGTGCTGGATGCCTCTTGGCAGAAATGTTCACGGGAAGGCCAATTCTGCCAGGTCGAACAGAGGTTGAACAACTCCACAAAATTTTCAAGTTATTTGGTACACCATCTGAGGAATATTGGAGAAAACTCAAGCTGGCACCAACTTTCAGACCTCCACAGTCGTATAGACCTACTCTCGGAGAGTTTTTTAAGCATTTTCCATCATCTTCTCTAGGCCTACTCAGCACTTTACTCGCTTTGGAGCCTTCATATCGTGGCTCTGCATCTTTAGCCCTCGAGAATGAATTCTTTTACACAAGCCCACTGGCATGCGGCCTTTCAGATCTTCCTGTAATCCACAGTGAGCCCGACGAACTGGATCAAACGAATCAGCAGAAGTGTAGGAATGCTAAAGTGACAAGGCGTTCTCACACACACCGAGAGCGCCGGAGGAAAGATTTAACCACAGGAATACCAAAAGAAGAATCAAACATTCCCAAACAGGTTTCACAGCAAACGGGAGATGGTGACAAACAAGGTGAAGAGCGAGGGAGTACTATGACAAGCACCTCCTCAAGTGTTAACATGGGAGGGCAAAAGGGGAGTAAAACGAAGAGCAGTTCCTCAAGTGTTAACACAGCAGCGCGAAAGGGGAGTACAACGACAAGCATTTCCTCAAGTGTTAACACAGGAGGGGGAAAGACGATGAACACCTTCTCGAGTGTGAACATGGGAGGGGGAAAGGGAAGCTCTCACTTCTTACTATCTCCAATTCCATATTCTACTAGGAAATCATCAAGAACTCAAGGCCATCTTGAGGGTGCTAAGAACTTCAACTTGCCTTCATTGCCTAAGACGAGAGAATACTCAACCTTCAACAACGAAGAGCATGGTGCATGTACCACAGGTCAGGTTCGGAGATCAGTCTCGACCAGAGATTTCAGGAACTTGGGGCGTAAAGAGCATTTGAAATTATATGTCGATGCTTAA 1824 46.27 MGCAQTKHSVSSPSGGIEKLKLENGYAGIEGFLAHRRSVRQRRYVGRESSEAEKPHGGDGGGGNGQFGSEKIELVDGWPKWLTSNIPKHVLAGLVPKSVEAYDKLDKVGQGSYSNVYKARDRESGKIVALKKVRFDTSEPESVKFMAREIMILLKLDHPNIVKLEGLATSRMQFSLYLVFDFMQTDLARVISHPDVCLTEPQVKCYMHQLLSGLKHCHDKGILHRDIKGSNLLIDKNGTLKIADFGLAIFISPKRPLTNRVVTLWYRAPELLLGATDYGVGIDLWSAGCLLAEMFTGRPILPGRTEVEQLHKIFKLFGTPSEEYWRKLKLAPTFRPPQSYRPTLGEFFKHFPSSSLGLLSTLLALEPSYRGSASLALENEFFYTSPLACGLSDLPVIHSEPDELDQTNQQKCRNAKVTRRSHTHRERRRKDLTTGIPKEESNIPKQVSQQTGDGDKQGEERGSTMTSTSSSVNMGGQKGSKTKSSSSSVNTAARKGSTTTSISSSVNTGGGKTMNTFSSVNMGGGKGSSHFLLSPIPYSTRKSSRTQGHLEGAKNFNLPSLPKTREYSTFNNEEHGACTTGQVRRSVSTRDFRNLGRKEHLKLYVDA 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7526495 7531019 + ClG42_08g0046800.10 Clacu08g0468 254810

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0468 607 PANTHER CELL DIVISION PROTEIN KINASE 102 382 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Clacu08g0468 607 Gene3D Phosphorylase Kinase; domain 1 92 184 - -
Clacu08g0468 607 FunFam probable serine/threonine-protein kinase At1g54610 89 184 - -
Clacu08g0468 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g0468 607 MobiDBLite consensus disorder prediction 439 453 - -
Clacu08g0468 607 Pfam Protein kinase domain 102 382 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0468 607 ProSitePatterns Protein kinases ATP-binding region signature. 108 131 IPR017441 GO:0005524(InterPro)
Clacu08g0468 607 SUPERFAMILY Protein kinase-like (PK-like) 97 385 IPR011009 -
Clacu08g0468 607 MobiDBLite consensus disorder prediction 461 514 - -
Clacu08g0468 607 MobiDBLite consensus disorder prediction 402 514 - -
Clacu08g0468 607 FunFam Putative serine/threonine-protein kinase 185 420 - -
Clacu08g0468 607 ProSiteProfiles Protein kinase domain profile. 102 382 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0468 607 SMART serkin_6 102 382 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0468 607 Gene3D Transferase(Phosphotransferase) domain 1 185 431 - -
Clacu08g0468 607 MobiDBLite consensus disorder prediction 43 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0468 K08819 - - csv:101209601 974.541
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1652 Clacu-Chr1:28617829 Clacu08g0468 Clacu-Chr8:7526495 1.40E-140 dispersed
Clacu08g0468 Clacu-Chr8:7526495 Clacu11g0205 Clacu-Chr11:1760002 3.60E-118 dispersed
Clacu08g0468 Clacu-Chr8:7526495 Clacu05g0668 Clacu-Chr5:5621629 6.40E-123 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1343 Blo01g01738 . . . . . . Bma01g02517 . . . Cma09g01247 Car01g00780 . . . . Bhi04g02165 . . . . . . Cla08g00325 Cam08g0756 Cec08g0290 . Clacu08g0468 . . Cone4ag1474 . . . . . . Cme03g00895 . . Bda11g00865 . . . . . . . Cmo09g01213 . . . Car09g01082 . . . . . . . . . . . . . . . . Lsi08g00253 . Chy03g00280 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002491 3 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 1 0 1 2 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73736 PF00069 Pkinase 1.30E-67 CL0016 Clacu PK