Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0497 ATGTCGTTTCGTAGTATAGTTCGTGACGTTAGAGAGGGGTTTGGAAGTTTATCCCGACGTAGTTTTGAGGTGAGACTGCCCGGTCACCAGCGGGGTAAATCTCATGGATCAGTCCATGATTTGCAAGACCAACCTCTGGTAATTCAGAATAGTCGTTGGGCTAGCCTCCCGCCTGAGCTATTGCGGGATGTAGTCATGAGACTGGAGAAGAGTGAGAGTGTGTGGCCTGCTCGCAAACATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCGTGGAGGGAAATGTGCAAAGAGATAGTAAAAAGTCCCGAGTTCTCTGGAAAAATCACCTTCCCTGTCTCTTTAAAACAGCCAGGGACTCGTGATGGAACCATTCAATGCTTCATTAAGAGGGACAAATCTAATTTGACTTATCACCTTTACCTTTGCCTTAGTCCTGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCCAAAAGAACGAGGAGAACGACCTGCACCGAATACGTGATCTCCATGGATGCAGATAATATATCAAGATCGAGCAACACCTACATTGGAAAACTACGGTCAAATTTTCTTGGGACCAAGTTCATTATCTATGATACACAACCTCCATACAACAATGCCCAGATTTCCCCACCGGGCCGTAGCCGTAGATTCTACTCGAAGAAAGTTTCCCCAAAAGTCCCAACTGGTAGCTATGAGATTGCTCAAGTCACTTACGAACTGAATGTTCTTGGTACAAGAGGCCCTCGAAAGATGCACTGCACGATGCACTCTATCCCTGCCTCGTCTCTTGAGGCCGGTGGTACTGTTCCGGGCCAGCCCGAGGTTGTCCCTCGACTCCTTGGGGATTCATTTCGGAGTATATCATTCTCCAAGTCTGTCTTCAATTCTACAGAGTTCAGTAGTTCCCGTTTCTCTGACATTGTCGGCTCTCAAGACGAAGATCAAATGGGGAAGGAGAGACCATTGATTCTTAGGAACAAGCCACCGCGGTGGCATGAGCAGTTGCAGTGTTGGTGCCTTAATTTCCGGGGGCGAGTGACCATTGCTTCTGTCAAGAACTTTCAACTGATAGCTGCTACAGAGCCATCTTCTTCCACAGCTACAAACCAATCACAGCCAAACCAACACGCCCAATCTTCCCAATCTGACCATGACAAGATCATTCTTCAATTTGGGAAGGTTGGGAAGGACATGTTTACGATGGATTACCGATATCCATTGTCAGCATTTCAAGCCTTTGCAATCTGTTTGAGTAGCTTTGACACCAAATTGGCTTGTGAATAA 1296 46.37 MSFRSIVRDVREGFGSLSRRSFEVRLPGHQRGKSHGSVHDLQDQPLVIQNSRWASLPPELLRDVVMRLEKSESVWPARKHVVACAAVCRSWREMCKEIVKSPEFSGKITFPVSLKQPGTRDGTIQCFIKRDKSNLTYHLYLCLSPALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGRSRRFYSKKVSPKVPTGSYEIAQVTYELNVLGTRGPRKMHCTMHSIPASSLEAGGTVPGQPEVVPRLLGDSFRSISFSKSVFNSTEFSSSRFSDIVGSQDEDQMGKERPLILRNKPPRWHEQLQCWCLNFRGRVTIASVKNFQLIAATEPSSSTATNQSQPNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8779629 8782288 - ClG42_08g0049700.10 Clacu08g0497 254839

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0497 431 CDD F-box_AtTLP-like 53 97 - -
Clacu08g0497 431 MobiDBLite consensus disorder prediction 367 387 - -
Clacu08g0497 431 Gene3D - 48 101 - -
Clacu08g0497 431 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Clacu08g0497 431 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Clacu08g0497 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Clacu08g0497 431 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Clacu08g0497 431 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Clacu08g0497 431 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Clacu08g0497 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Clacu08g0497 431 FunFam Tubby-like F-box protein 110 431 - -
Clacu08g0497 431 Gene3D Tubby Protein; Chain A 112 425 IPR025659 -
Clacu08g0497 431 PANTHER TUBBY-RELATED 47 430 - -
Clacu08g0497 431 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Clacu08g0497 431 FunFam Tubby-like F-box protein 48 101 - -
Clacu08g0497 431 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515(InterPro)
Clacu08g0497 431 SUPERFAMILY Tubby C-terminal domain-like 102 431 IPR025659 -
Clacu08g0497 431 Pfam Tub family 114 426 IPR000007 -
Clacu08g0497 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Clacu08g0497 431 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0497 K19600 - - csv:101206041 845.884
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1148 Clacu-Chr5:10543232 Clacu08g0497 Clacu-Chr8:8779629 2.30E-191 dispersed
Clacu06g0531 Clacu-Chr6:6053206 Clacu08g0497 Clacu-Chr8:8779629 1.90E-109 dispersed
Clacu08g0497 Clacu-Chr8:8779629 Clacu08g0848 Clacu-Chr8:18524482 9.30E-201 dispersed
Clacu08g0497 Clacu-Chr8:8779629 Clacu05g0667 Clacu-Chr5:5615677 3.80E-122 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1377 Blo01g01728 Blo12g00786 . Bda03g00391 Bpe02g00213 Bpe04g00353 Bma04g00369 Bma01g02507 Cmo04g02565 Cmo15g00602 . . . . . . Cpe13g00683 Bhi04g01774 Tan11g1139 . . . . . Cla08g00355 Cam08g0782 Cec08g0347 Cco08g0447 Clacu08g0497 . Cre08g0325 . . . . . . . Cme03g00315 . . Bda11g00874 . . . . . . . . . . Car04g02358 Car15g00552 Cpe01g02118 . . . . . . . . . . . . . . . Lsi08g00555 . Chy03g00507 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g0497 . 1 431 TUB Transcription Factor Family AT1G76900 72.7 6.8e-178 620.5
Clacu05g1148 . 1 428 TUB Transcription Factor Family AT1G76900 69.9 2.6e-169 592.0
Clacu08g0848 . 1 432 TUB Transcription Factor Family AT1G76900 68.6 1.7e-168 589.3
Clacu05g0667 . 13 387 TUB Transcription Factor Family AT1G76900 50.7 3.2e-111 399.1
Clacu05g1148 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 8.0e-102 367.1
Clacu08g0497 . 173 431 TUB Transcription Factor Family AT1G25280 67.7 4.7e-94 341.3
Clacu08g0848 . 175 432 TUB Transcription Factor Family AT1G25280 70.0 2.0e-92 335.9
Clacu05g0667 . 154 387 TUB Transcription Factor Family AT1G25280 53.6 4.7e-70 261.5
Clacu05g2058 . 309 536 TUB Transcription Factor Family AT1G25280 53.8 1.4e-66 250.0
Clacu01g2022 . 176 413 TUB Transcription Factor Family AT1G25280 51.3 1.1e-63 240.4
Clacu06g0531 . 154 362 TUB Transcription Factor Family AT1G25280 50.2 2.4e-53 206.1
Clacu05g0667 . 98 387 TUB Transcription Factor Family AT5G18680 62.4 1.5e-96 349.7
Clacu06g0531 . 98 362 TUB Transcription Factor Family AT5G18680 61.0 1.4e-86 316.6
Clacu08g0497 . 112 431 TUB Transcription Factor Family AT5G18680 52.8 3.8e-84 308.5
Clacu08g0848 . 112 432 TUB Transcription Factor Family AT5G18680 51.2 1.9e-83 306.2
Clacu05g1148 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 9.2e-83 303.9
Clacu05g2058 . 245 536 TUB Transcription Factor Family AT5G18680 51.9 3.4e-77 285.4
Clacu01g2022 . 1 413 TUB Transcription Factor Family AT2G18280 61.3 1.6e-138 489.6
Clacu05g2058 . 131 536 TUB Transcription Factor Family AT2G18280 59.0 4.4e-125 444.9
Clacu05g1148 . 1 428 TUB Transcription Factor Family AT2G18280 52.9 3.6e-119 425.2
Clacu08g0497 . 1 431 TUB Transcription Factor Family AT2G18280 52.0 2.2e-116 416.0
Clacu05g0667 . 1 387 TUB Transcription Factor Family AT2G18280 53.8 8.4e-116 414.1
Clacu08g0848 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 1.1e-112 403.7
Clacu06g0531 . 1 362 TUB Transcription Factor Family AT2G18280 51.3 6.5e-100 361.3
Clacu05g0667 . 1 387 TUB Transcription Factor Family AT2G47900 68.7 1.5e-160 562.8
Clacu06g0531 . 1 362 TUB Transcription Factor Family AT2G47900 67.3 2.1e-146 515.8
Clacu08g0497 . 1 431 TUB Transcription Factor Family AT2G47900 55.3 1.0e-132 470.3
Clacu08g0848 . 1 432 TUB Transcription Factor Family AT2G47900 56.6 2.5e-131 465.7
Clacu05g1148 . 1 428 TUB Transcription Factor Family AT2G47900 56.6 9.6e-131 463.8
Clacu05g2058 . 140 536 TUB Transcription Factor Family AT2G47900 55.4 4.6e-117 418.3
Clacu01g2022 . 1 413 TUB Transcription Factor Family AT2G47900 53.6 2.8e-114 409.1
Clacu07g1025 . 53 383 TUB Transcription Factor Family AT2G47900 52.1 2.3e-100 362.8
Clacu09g0346 . 82 297 TUB Transcription Factor Family AT1G16070 61.4 8.5e-73 270.8
Clacu08g0497 . 67 431 TUB Transcription Factor Family AT1G43640 70.2 1.3e-147 519.6
Clacu05g1148 . 66 428 TUB Transcription Factor Family AT1G43640 68.0 1.1e-146 516.5
Clacu08g0848 . 65 432 TUB Transcription Factor Family AT1G43640 65.8 3.1e-141 498.4
Clacu05g0667 . 49 387 TUB Transcription Factor Family AT1G43640 53.4 2.8e-105 379.0
Clacu05g2058 . 198 536 TUB Transcription Factor Family AT1G43640 50.1 2.3e-99 359.4
Clacu06g0531 . 49 362 TUB Transcription Factor Family AT1G43640 50.7 2.4e-93 339.3
Clacu05g2058 . 164 536 TUB Transcription Factor Family AT1G47270 64.4 1.0e-134 476.9
Clacu01g2022 . 33 413 TUB Transcription Factor Family AT1G47270 56.7 2.9e-121 432.2
Clacu05g1148 . 1 428 TUB Transcription Factor Family AT1G47270 52.1 1.2e-114 410.2
Clacu08g0497 . 30 431 TUB Transcription Factor Family AT1G47270 51.6 1.9e-112 402.9
Clacu08g0848 . 48 432 TUB Transcription Factor Family AT1G47270 55.0 5.6e-112 401.4
Clacu05g0667 . 1 387 TUB Transcription Factor Family AT1G47270 50.5 2.5e-104 375.9
Clacu07g1025 . 50 383 TUB Transcription Factor Family AT1G53320 76.8 9.2e-152 533.5
Clacu05g0667 . 98 387 TUB Transcription Factor Family AT3G06380 63.8 4.9e-97 351.3
Clacu05g1148 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 4.5e-82 301.6
Clacu06g0531 . 98 362 TUB Transcription Factor Family AT3G06380 60.2 4.5e-82 301.6
Clacu08g0848 . 116 432 TUB Transcription Factor Family AT3G06380 52.1 6.4e-81 297.7
Clacu08g0497 . 116 431 TUB Transcription Factor Family AT3G06380 50.3 4.2e-80 295.0
Clacu05g2058 . 249 536 TUB Transcription Factor Family AT3G06380 52.9 3.5e-79 292.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48126 PF01167 Tub 1.20E-118 CL0395 Clacu TF