Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0497 ATGTCGTTTCGTAGTATAGTTCGTGACGTTAGAGAGGGGTTTGGAAGTTTATCCCGACGTAGTTTTGAGGTGAGACTGCCCGGTCACCAGCGGGGTAAATCTCATGGATCAGTCCATGATTTGCAAGACCAACCTCTGGTAATTCAGAATAGTCGTTGGGCTAGCCTCCCGCCTGAGCTATTGCGGGATGTAGTCATGAGACTGGAGAAGAGTGAGAGTGTGTGGCCTGCTCGCAAACATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCGTGGAGGGAAATGTGCAAAGAGATAGTAAAAAGTCCCGAGTTCTCTGGAAAAATCACCTTCCCTGTCTCTTTAAAACAGCCAGGGACTCGTGATGGAACCATTCAATGCTTCATTAAGAGGGACAAATCTAATTTGACTTATCACCTTTACCTTTGCCTTAGTCCTGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCCAAAAGAACGAGGAGAACGACCTGCACCGAATACGTGATCTCCATGGATGCAGATAATATATCAAGATCGAGCAACACCTACATTGGAAAACTACGGTCAAATTTTCTTGGGACCAAGTTCATTATCTATGATACACAACCTCCATACAACAATGCCCAGATTTCCCCACCGGGCCGTAGCCGTAGATTCTACTCGAAGAAAGTTTCCCCAAAAGTCCCAACTGGTAGCTATGAGATTGCTCAAGTCACTTACGAACTGAATGTTCTTGGTACAAGAGGCCCTCGAAAGATGCACTGCACGATGCACTCTATCCCTGCCTCGTCTCTTGAGGCCGGTGGTACTGTTCCGGGCCAGCCCGAGGTTGTCCCTCGACTCCTTGGGGATTCATTTCGGAGTATATCATTCTCCAAGTCTGTCTTCAATTCTACAGAGTTCAGTAGTTCCCGTTTCTCTGACATTGTCGGCTCTCAAGACGAAGATCAAATGGGGAAGGAGAGACCATTGATTCTTAGGAACAAGCCACCGCGGTGGCATGAGCAGTTGCAGTGTTGGTGCCTTAATTTCCGGGGGCGAGTGACCATTGCTTCTGTCAAGAACTTTCAACTGATAGCTGCTACAGAGCCATCTTCTTCCACAGCTACAAACCAATCACAGCCAAACCAACACGCCCAATCTTCCCAATCTGACCATGACAAGATCATTCTTCAATTTGGGAAGGTTGGGAAGGACATGTTTACGATGGATTACCGATATCCATTGTCAGCATTTCAAGCCTTTGCAATCTGTTTGAGTAGCTTTGACACCAAATTGGCTTGTGAATAA 1296 46.37 MSFRSIVRDVREGFGSLSRRSFEVRLPGHQRGKSHGSVHDLQDQPLVIQNSRWASLPPELLRDVVMRLEKSESVWPARKHVVACAAVCRSWREMCKEIVKSPEFSGKITFPVSLKQPGTRDGTIQCFIKRDKSNLTYHLYLCLSPALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGRSRRFYSKKVSPKVPTGSYEIAQVTYELNVLGTRGPRKMHCTMHSIPASSLEAGGTVPGQPEVVPRLLGDSFRSISFSKSVFNSTEFSSSRFSDIVGSQDEDQMGKERPLILRNKPPRWHEQLQCWCLNFRGRVTIASVKNFQLIAATEPSSSTATNQSQPNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8779629 8782288 - ClG42_08g0049700.10 Clacu08g0497 254839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0497 431 CDD F-box_AtTLP-like 53 97 - -
Clacu08g0497 431 MobiDBLite consensus disorder prediction 367 387 - -
Clacu08g0497 431 Gene3D - 48 101 - -
Clacu08g0497 431 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Clacu08g0497 431 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Clacu08g0497 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Clacu08g0497 431 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Clacu08g0497 431 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Clacu08g0497 431 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Clacu08g0497 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Clacu08g0497 431 FunFam Tubby-like F-box protein 110 431 - -
Clacu08g0497 431 Gene3D Tubby Protein; Chain A 112 425 IPR025659 -
Clacu08g0497 431 PANTHER TUBBY-RELATED 47 430 - -
Clacu08g0497 431 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Clacu08g0497 431 FunFam Tubby-like F-box protein 48 101 - -
Clacu08g0497 431 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515(InterPro)
Clacu08g0497 431 SUPERFAMILY Tubby C-terminal domain-like 102 431 IPR025659 -
Clacu08g0497 431 Pfam Tub family 114 426 IPR000007 -
Clacu08g0497 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Clacu08g0497 431 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1148 Clacu-Chr5:10543232 Clacu08g0497 Clacu-Chr8:8779629 2.30E-191 dispersed
Clacu06g0531 Clacu-Chr6:6053206 Clacu08g0497 Clacu-Chr8:8779629 1.90E-109 dispersed
Clacu08g0497 Clacu-Chr8:8779629 Clacu08g0848 Clacu-Chr8:18524482 9.30E-201 dispersed
Clacu08g0497 Clacu-Chr8:8779629 Clacu05g0667 Clacu-Chr5:5615677 3.80E-122 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48126 PF01167 Tub 1.20E-118 CL0395 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0497 K19600 - csv:101206041 845.884