Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0501 ATGCTTGGGGACTCCACTACTTCCGTCTTGGGCGGCGGCGCCGGAGGAGGAGAGGCCGCTGTGCCGGAGACGACTCATCATCACGATGGACTGATGGGGGACATGGAGGAGAATAATAACAATTCTGGTGAGGATGAGAGAGGGAGAAGCGGAGGTGGCGGCGGAGACGACGGTGACCGGAGCTTCGGCGGAAACCGGTGGCCGAGACAAGAAACTTTAGCTCTCTTGAAAATACGGTCAGAAATGGACGTGGCTTTTCGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAATTTCCAGGAAATTGGGGGAGCTTGGGTATCATCGAAGTGCAAAAAAATGCAAGGAGAAATTTGAGAATGTTTACAAATATCACAAAAGAACTAAAGAAGTTAGAAGTGGGAAACCAGATAGCAAAACTTATAAGTTCTTTGAACAATTAGAAGCTCTTGAGAATCACCCTCCTCTTAATTTCCACTCCCATTTGTCTAAACCAACTCCTCCGCCGCAGCCGCCACCGCCTACCGCCGTCATTTCCCCCATTCCTTCAAGTACTGTTCCATCCACCACTCTACCTCACTTGATGAACATATCATTCTCTCAACCAAACCCCACAATTCATCTCCCATCTCCTCCGCCCCCTCCTGCTCCGTTGCCATTGAATAACCCTACAAGTTTACCCACCACCGTCCCTCCCTCCATGCCGTTTCAAATCAATGTGCCTTCGGCGGGAGTGGGGTTTCAGAGCATTGAAGCGGATCTCATCTCGAACTCGACGTCTGATGATATCAATTCGTCAACGTCATCAGATGAGGCGTCGAGAAAGAGGAGGAGGAAGAGGAAATGGAAGGACTTTTTTGAGAGATTGATGAAGGAAGTGATTCAAAAGCAAGAGGAAATGCAAAAGAGATTCTTGGAAGCAATTGAGAAGAGGGAGCAAGAGAGAGTTGTGAGAGAAGAAGCTTGGAGGATGCAAGAGATGGCCAAAATCAATAGAGAAAGAGAGATTTTAGCTCAAGAAAGATCAATGGCAGCTGCAAAAGATGCTGCGATTACATCGTTCCTTCAAAAAATAACTGAATCCCAACACAACAATAACAACAACAACGCATCACAACCGTCACCACCGCCCCCGCCACCGCCACCGTCCCAACAACAACAACAACCAATTCCAACGTCAAATCCAACACCAGTCGTGCAACCTTCACCGCGACCGCCACCTCCGGCCGCACCACAAGCTTCCACATTGCAAGTTGTTGTTCCCAATTCCACCCCACAAAAAGTGGGGAACAATAATGAATTGTTGCAAATGGAAATCATGAAAATGGATCATAATGGTGGGGAGAATTATAGCATTAGCCCAGCTTCAAGCTCATCAAGATGGCCAAAAGTGGAAGTTCAAGCACTGATCAAATTGAGAACAAACCTTGAAACCAAATATCAAGAGAATGGGCCAAAAGGGCCTTTATGGGAAGAGATATCATCAGCCATGAAGAAACTTGGGTACAATAGAAATGCAAAGAGGTGCAAAGAGAAGTGGGAAAACATAAACAAATACTTCAAGAAAGTGAAGGAAAGTAGAAAAGCAAGGCCTGAAGATTCCAAGACTTGCCCTTATTTTCACCAGCTTGATGCTTTGTATAGGGAGAAGAGCAACAACACGAACAACAACATAATCGGATCCTCGACGCAAATTATGCAGCATCAACAGCAGCCATTGATGGTTCGTCCCGAGCAACAATGGCCTCCCCAACAAGAGATCACCCGCCCCGACTCAGGAAACGAAGAGATGGAGAGTGAACCAATGGATCGTGATGATAAAGACGATGATGAAGAAGATGAAGAGGAAGAGGACGAAGGTGGAGGGAACTATGAGATTGTGGCAAGCAAACCAGCTTCAGTGAGTGCTGCAGAGTGA 1920 46.93 MLGDSTTSVLGGGAGGGEAAVPETTHHHDGLMGDMEENNNNSGEDERGRSGGGGGDDGDRSFGGNRWPRQETLALLKIRSEMDVAFRDASVKGPLWEQISRKLGELGYHRSAKKCKEKFENVYKYHKRTKEVRSGKPDSKTYKFFEQLEALENHPPLNFHSHLSKPTPPPQPPPPTAVISPIPSSTVPSTTLPHLMNISFSQPNPTIHLPSPPPPPAPLPLNNPTSLPTTVPPSMPFQINVPSAGVGFQSIEADLISNSTSDDINSSTSSDEASRKRRRKRKWKDFFERLMKEVIQKQEEMQKRFLEAIEKREQERVVREEAWRMQEMAKINREREILAQERSMAAAKDAAITSFLQKITESQHNNNNNNASQPSPPPPPPPPSQQQQQPIPTSNPTPVVQPSPRPPPPAAPQASTLQVVVPNSTPQKVGNNNELLQMEIMKMDHNGGENYSISPASSSSRWPKVEVQALIKLRTNLETKYQENGPKGPLWEEISSAMKKLGYNRNAKRCKEKWENINKYFKKVKESRKARPEDSKTCPYFHQLDALYREKSNNTNNNIIGSSTQIMQHQQQPLMVRPEQQWPPQQEITRPDSGNEEMESEPMDRDDKDDDEEDEEEEDEGGGNYEIVASKPASVSAAE 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9245709 9248298 + ClG42_08g0050100.10 Clacu08g0501 254843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0501 639 ProSiteProfiles Myb-like domain profile. 65 123 IPR001005 -
Clacu08g0501 639 MobiDBLite consensus disorder prediction 599 623 - -
Clacu08g0501 639 MobiDBLite consensus disorder prediction 206 231 - -
Clacu08g0501 639 MobiDBLite consensus disorder prediction 566 639 - -
Clacu08g0501 639 Coils Coil 284 315 - -
Clacu08g0501 639 Gene3D - 67 128 - -
Clacu08g0501 639 Gene3D - 462 523 - -
Clacu08g0501 639 MobiDBLite consensus disorder prediction 372 413 - -
Clacu08g0501 639 ProSiteProfiles Myb-like domain profile. 454 518 IPR001005 -
Clacu08g0501 639 FunFam Trihelix transcription factor GT-2 67 128 - -
Clacu08g0501 639 FunFam Trihelix transcription factor GT-2 462 523 - -
Clacu08g0501 639 MobiDBLite consensus disorder prediction 156 238 - -
Clacu08g0501 639 MobiDBLite consensus disorder prediction 162 181 - -
Clacu08g0501 639 MobiDBLite consensus disorder prediction 363 416 - -
Clacu08g0501 639 MobiDBLite consensus disorder prediction 566 591 - -
Clacu08g0501 639 PANTHER FI21293P1 38 609 - -
Clacu08g0501 639 MobiDBLite consensus disorder prediction 259 280 - -
Clacu08g0501 639 Pfam Myb/SANT-like DNA-binding domain 65 151 IPR044822 -
Clacu08g0501 639 Pfam Myb/SANT-like DNA-binding domain 460 547 IPR044822 -
Clacu08g0501 639 PRINTS Proline rich extensin signature 203 215 - -
Clacu08g0501 639 PRINTS Proline rich extensin signature 167 183 - -
Clacu08g0501 639 PRINTS Proline rich extensin signature 374 399 - -
Clacu08g0501 639 PRINTS Proline rich extensin signature 215 236 - -
Clacu08g0501 639 MobiDBLite consensus disorder prediction 22 54 - -
Clacu08g0501 639 SMART sant 63 125 IPR001005 -
Clacu08g0501 639 SMART sant 458 520 IPR001005 -
Clacu08g0501 639 CDD GT1 65 130 - -
Clacu08g0501 639 MobiDBLite consensus disorder prediction 1 67 - -
Clacu08g0501 639 CDD GT1 461 525 - -
Clacu08g0501 639 MobiDBLite consensus disorder prediction 182 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0115 Clacu-Chr1:1069005 Clacu08g0501 Clacu-Chr8:9245709 2.10E-93 dispersed
Clacu01g1087 Clacu-Chr1:15938926 Clacu08g0501 Clacu-Chr8:9245709 2.40E-34 dispersed
Clacu02g0073 Clacu-Chr2:740619 Clacu08g0501 Clacu-Chr8:9245709 1.20E-90 dispersed
Clacu06g0993 Clacu-Chr6:14419032 Clacu08g0501 Clacu-Chr8:9245709 2.90E-38 dispersed
Clacu08g0501 Clacu-Chr8:9245709 Clacu10g1906 Clacu-Chr10:32720489 4.50E-34 dispersed
Clacu08g0501 Clacu-Chr8:9245709 Clacu08g0502 Clacu-Chr8:9382676 1.40E-88 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48127 PF13837 Myb_DNA-bind_4 2.90E-21 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0501 - - - 0.0