Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0502 ATGGATGTCGACTCCGGCGAGGCAGTGGTGACAGAGGCGGGGGAAGCTCATGAAGTTGGCAACGGCGACGGCCGTGGCGGCGGCGGTGGAAACGGATCGAATTCCGGCGAAGAAGATAAAGGGTCATCTTTGTTGTTGTTTGAAGATGGTGAGAAGAATTTTGGTGGGAACAGGTGGCCAAGACAAGAGACTTTGGCTTTGTTGAAGATAAGATCTGATATGGATGCAATTTTTAGAGATGCAACTCATAAAGCTCCATTGTGGGATGAAGTTTCAAGGAAATTAGGAGAGCTGGGATTCAATCGAACTCCAAAGAAATGCAAGGAGAAATTTGAGAATGTTTATAAGTATCACAAGAGAACCAAAGATGTTCGAAGTGGGAAATCCGATAACAGCAAAAAAGTTTATAGATTTTCAGATGAATTGGAGGCTTTTGATCACCATAATAGCCATCACCAAAATCACATTTTATTCCAATCTCACCACCACCAGCCGCCGCAGCCGCCACCACCACTGCCGCCAGTTCCTCCGACGACGACAACAACACCACCTCCAGTGATGAAAACAGTCAACTCTACTGTTTCATCCACCATGAACACTACAACAAACAACAACTCTTTGCCACCAAAGTCTTCTAATAACCCTCTTTCCAATTTGCCAAACATGGCTGCCAATGTGATGTTTTCGAGCTCCACTTCATCGTCGACGGCGTCGGAGGAAGATCCGTTTCGGAGTAGCAGGAGGAGGAGGAAGAAGAGGAAGTGGAGTGATTTCTTCTTGAGATTAACAAAGGAGGTAATAGAGAAGCAAGAAGGGCTTCAATTAAAGTTCCTAGAAGCCTTGGAGAGAATAGAGAATCAAAGGAAATTGAGAGATGAAGCATGGAGAATGAAAGAAATGAAAAGGGTTAATCAAGAACATGAAGTTTTAGTTCAAGAGATGTCCATGGCCGCAGCGAAAGATGCAGCCGTCGTCGCATTTTTGCAAAAGATAGCTCCATTTTCGGCTCCGCCACCGCCACCGCCGCCACCACCAATGACAACTCAGTCGCAAAACAACGAGAATAACGGAAAGATGACGTCCGTAATCCCGATGACGAATGGAAAGGTGAGCAGCATTGGAGGAAGCCCTTCAAGATGGCCAAAAGGTGAAGTTGAAGCATTGATAAGACTAAGGACAGAAATGGAAATGAAATATCAAGAGAATGGGCCAAAAGGGTTATTATGGGAGGAGATTTCAGCAGCAATGAGAGGACTTGGATACAATAGAAGCTCAAAGAGATGCAAAGAGAAATGGGAAAATATAAACAAATACTTCAAAAAGGTGAAAGATAGCAACAAGAAGAGAGCAGAAGATTCCAAGACATGTCCTTACTTTCATCAATTAGATGCTCTTTATAGAGAGAAAGAAAAAAATATGAATAATTTTGATATCAATAGCCAAATGGAGCCATTGATGGTTGAACCAGAACAACAATGGCCACCTCCATTTCAAGCCAATAATCAAATCATGGGAAGTTTACAAAGAATAAATGATGAAGGAAATCAAGAAGAAGATGATGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGAGGAAGTAGTAGCACAGATGTGGAAGATTGA 1638 42.74 MDVDSGEAVVTEAGEAHEVGNGDGRGGGGGNGSNSGEEDKGSSLLLFEDGEKNFGGNRWPRQETLALLKIRSDMDAIFRDATHKAPLWDEVSRKLGELGFNRTPKKCKEKFENVYKYHKRTKDVRSGKSDNSKKVYRFSDELEAFDHHNSHHQNHILFQSHHHQPPQPPPPLPPVPPTTTTTPPPVMKTVNSTVSSTMNTTTNNNSLPPKSSNNPLSNLPNMAANVMFSSSTSSSTASEEDPFRSSRRRRKKRKWSDFFLRLTKEVIEKQEGLQLKFLEALERIENQRKLRDEAWRMKEMKRVNQEHEVLVQEMSMAAAKDAAVVAFLQKIAPFSAPPPPPPPPPMTTQSQNNENNGKMTSVIPMTNGKVSSIGGSPSRWPKGEVEALIRLRTEMEMKYQENGPKGLLWEEISAAMRGLGYNRSSKRCKEKWENINKYFKKVKDSNKKRAEDSKTCPYFHQLDALYREKEKNMNNFDINSQMEPLMVEPEQQWPPPFQANNQIMGSLQRINDEGNQEEDDDEEEEEEEEEEEEEDGGSSSTDVED 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9382676 9384919 - ClG42_08g0050200.10 Clacu08g0502 254844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0502 545 MobiDBLite consensus disorder prediction 491 545 - -
Clacu08g0502 545 ProSiteProfiles Myb-like domain profile. 51 115 IPR001005 -
Clacu08g0502 545 MobiDBLite consensus disorder prediction 158 252 - -
Clacu08g0502 545 Pfam Myb/SANT-like DNA-binding domain 378 465 IPR044822 -
Clacu08g0502 545 Pfam Myb/SANT-like DNA-binding domain 57 137 IPR044822 -
Clacu08g0502 545 MobiDBLite consensus disorder prediction 514 545 - -
Clacu08g0502 545 SMART sant 55 117 IPR001005 -
Clacu08g0502 545 SMART sant 376 438 IPR001005 -
Clacu08g0502 545 CDD GT1 378 443 - -
Clacu08g0502 545 MobiDBLite consensus disorder prediction 163 183 - -
Clacu08g0502 545 FunFam Trihelix transcription factor GT-2 59 120 - -
Clacu08g0502 545 MobiDBLite consensus disorder prediction 1 44 - -
Clacu08g0502 545 FunFam Trihelix transcription factor GT-2 380 441 - -
Clacu08g0502 545 PANTHER FI21293P1 31 524 - -
Clacu08g0502 545 ProSiteProfiles Myb-like domain profile. 378 436 IPR001005 -
Clacu08g0502 545 MobiDBLite consensus disorder prediction 349 374 - -
Clacu08g0502 545 Gene3D - 59 120 - -
Clacu08g0502 545 Gene3D - 380 441 - -
Clacu08g0502 545 MobiDBLite consensus disorder prediction 335 379 - -
Clacu08g0502 545 MobiDBLite consensus disorder prediction 494 511 - -
Clacu08g0502 545 MobiDBLite consensus disorder prediction 184 240 - -
Clacu08g0502 545 CDD GT1 57 122 - -
Clacu08g0502 545 Coils Coil 507 535 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0502 Clacu-Chr8:9382676 Clacu10g1906 Clacu-Chr10:32720489 3.70E-21 dispersed
Clacu08g0501 Clacu-Chr8:9245709 Clacu08g0502 Clacu-Chr8:9382676 1.40E-88 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48128 PF13837 Myb_DNA-bind_4 4.10E-22 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0502 - - - 0.0