Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu08g0589 | ATGAGCAGAAGGGGGCTGAAATCTCTCCAATTTCTCTCAGCCTCCTTCATTTCTTCTCCAATTAAATCCAAGGCCATCTTCTCTTCAAACCCATTTCCGTCATACTCCCATTCTTCTATACTTGCCCACGCTTTCATCCGTGTATATCGCCAATCGCTTTCCTCCCCCATTTTCCACTACTCCACTTCTTCTCCGGACGATCTCGAAGGATTGGTTGATCCGGTCGAGTCGCTTTCCTCTGACACTTCGCGGGTCCAATGCTTTTCCCCCAAAGAAGTCTCGCTTCTGCGTGATTTGTTGTTGGATTCTCATGCTGACTCTGGTTCTTCAGAGCAGAAGCTCCAGACTGGTAAGATTTCAAACGAAGCCATTTCGATATTAGATGCAATTCGAAATTGTGATGATGGGTTCGGGGACAAAACCCATATATTACTTAGGCAGTTCAGGCATAAGTTGAATCCAGATTTGGTGGTTGAGATTTTGAGTCTTTTGAGAAGTCCTGAATTGTGTGTCAAGTTCTTTCTATGGGCGGGTCGACAAGTTGGTTACAGTCATACTACGTCTGTGTACAATGCGTTGTTAGATGTTTACGAGCGTGGTAGTTATGATCGAGTACCCGAGCAGTTTCTTCAGGAAATTAAGGGTGATGACAAAGAGGTGCTTGGGAAGCTGCTTAATGTATTGATTAGAAAGTGTTGCCGAAATGGGTTGTGGAATGTAGCATTGGAAGAGCTCGGGAGGCTTAAGGACTTTGGGTACAAGCCTACCCGATTAACTTATAATGCTTTAGTTCAAGTCTTTCTCAGGGCGGATAAGTTAGACACTGCTCATTTGGTTCATAGAGAAATGTCAGAATTAGGATTTAGTATGGATGAGTTTACTCTTGGTTTATTTGCTCAAGCTCTCTGCAAAGTGGGCAAATGGAGAGAGGCCCTCTCATTAATTGAGGAAGAAGATTTTGTTCCTAATACGATTCTTTATAATAAGATGATATCTGGACTGTGTGAATCTTCATTTTTTGAAGAAGCAATGGATTTTTTGAACAGGATGCGGTCTAGTTCTTGCATCCCTAATGTTCAGACTTATAAGATATTGCTTTGTGGCTGTTTGAATAAAAAACAGTTGGGTCGATGTAAGAGAATTCTAAGCATGATGATTGCAGAAGGCTGTTTTCTGAGTTGTACGATGTTTAATTCTCTTGTACATGCTTATTGCAAATCAGGGGACTTTTCATATGCTTATAAGTTGCTTAAGAAAATGGAAAAATGTGAATGCAAACCTGGCTATGTGGTTTACAATATCTTAATTGGCAGTATTTGTAGCAATGAAGAACTACCTGGGCCAGTTACATTTGAGTTGGCTGAGAAAGCTTACAATGAGATGCTTTCTGCCGGAACTGTTCTAAATAAGGTCAACGTTGTAAGCTTTGCTCGATGCCTTTGTGGCTATGGGAAATTTGAGAAAGCTTATAAAGTAATTCATGAAATGATGGGTAATGGTTTCGTTCCTGATACTTCTACATATTCTGAAGTGATAGGTTTTCTATGTAATGCATCCAGGGTAGAAAATGCCTTTCTGCTTTTTAAAGAAATGAAAAGGAATGGTGTGGTTCCTGATGTTTATACATACACAATTTTAATTGATTGTTTTTCTAAAGTTGGCCTCATCAAACAAGCTCACAATTGGCTAGATGAAATGGTAAGAGATGGCTGTGAACCTACTGTGGTGACTTATACAACCCTCATCCATGCATATCTTAAGGCTAAGAAAGTTTCTGTTGCTAATGAACTTTTTGAGTTAATGATAGCCAAGGGTTGTTTTCCTAATGTAATTACATATACAGCTTTAATTGATGGCTATTGTAAATCAGGGAATATAGAAAAAGCTTGCCAGATTTATGCAAGAATGAGAGGTGATGCAGACATTGGTGATGTAGATATGTATTTTAAAATAGAAAATAATGTGGCTGAAAAGCCAAATGTTGTTACATATGGAGCTTTAGTGGATGGTTTATGCAAGGCCCATAAAGTCAAAGATGCCCGTGACTTGTTGGAGACCATGTTTGTGGAAGGCTGTGAACCAAACAACGTTGTATATGATGCACTTATTGATGGATTTTGTAAGGCTGCAAAATTGGATGAAGCACAAGAGGTCTTTCTTAAGATGGTAGAGCGTGGGTATAATCCCAATGTCTATACTTATAGCTCTCTTATTGATAGACTATTCAAGGATAAACGTCTAGATCTTGTTTTGAAAGTGTTGTCCAAAATGTTAGAGGATTCTTGTCCTCCTAACGTTGTTATCTACACAGAGATGATTGATGGCCTTTCTAAAGTGGCAAGGACAGATGAAGCTTATAAGCTTATGTTGATGATGGAAGAGAAGGGATGTAAACCAAATGTTGTGACCTACACTGCAATGATTGATGGCTTTGGGAAAGCTGGTAAAGTCGACAAATGCCTTGAGCTTTTCAGGGAAATGGGGTCAAAAGGTTGTGCTCCAAATTTTGTTACCTACACGGTGTTGATCAACCATTGCTGTGCTTCTGGCTGTTTAGACGAGGCTTATGCACTTTTGGTAGAAATGAAACAAACGTATTGGCCAAAATATGTCTCGAGCTACTGTAAGGTCATTGAAGGCTATAAACGGGAGTTCATTCTCTCTCTTGGGCTTTTAGAGGAAGTGGAGAAGAATGATTGTGCTCCAATTATTATGCTATATAGGGTTTTGATTGATAACTTTGTTAAGGCAGGAAGACTGGAAGTGGCACTGGAGCTCCACAAAGAGGTCATATCAGCTTCAATGTCCATGGCTGCTAAGAGAAATATGTATACAACTTTGATTTACAGCTTTTCTAATGCAACTAAGATTGGTCAGGCGTTTGAGTTATTCTATAATATGATAAGAGAGGGTGTTATACCAGATCTTGGTACACTTGTCCACCTTATTATGGGGCTTATCAGAGTTAGCAGGTGGGAAGAAGCACTTCAGCTGTCAGATAGCATATGTCAAATGGATATCAATTGGAGAAGGGATTATTCAGAGGAAACTGCAGGTCTGAACTGCCAACAGGATGAGTTTGTGCGCATTAGAGCTGTTAAACTGATTTTCTGCAGTTGGTTCCTTCACATCCCCATGATGGAAAGAACTCCCTTTGCCTAA | 3162 | 39.78 | MSRRGLKSLQFLSASFISSPIKSKAIFSSNPFPSYSHSSILAHAFIRVYRQSLSSPIFHYSTSSPDDLEGLVDPVESLSSDTSRVQCFSPKEVSLLRDLLLDSHADSGSSEQKLQTGKISNEAISILDAIRNCDDGFGDKTHILLRQFRHKLNPDLVVEILSLLRSPELCVKFFLWAGRQVGYSHTTSVYNALLDVYERGSYDRVPEQFLQEIKGDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRLTYNALVQVFLRADKLDTAHLVHREMSELGFSMDEFTLGLFAQALCKVGKWREALSLIEEEDFVPNTILYNKMISGLCESSFFEEAMDFLNRMRSSSCIPNVQTYKILLCGCLNKKQLGRCKRILSMMIAEGCFLSCTMFNSLVHAYCKSGDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSNEELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGYGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFLLFKEMKRNGVVPDVYTYTILIDCFSKVGLIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIGDVDMYFKIENNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVEGCEPNNVVYDALIDGFCKAAKLDEAQEVFLKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLEDSCPPNVVIYTEMIDGLSKVARTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCASGCLDEAYALLVEMKQTYWPKYVSSYCKVIEGYKREFILSLGLLEEVEKNDCAPIIMLYRVLIDNFVKAGRLEVALELHKEVISASMSMAAKRNMYTTLIYSFSNATKIGQAFELFYNMIREGVIPDLGTLVHLIMGLIRVSRWEEALQLSDSICQMDINWRRDYSEETAGLNCQQDEFVRIRAVKLIFCSWFLHIPMMERTPFA | 1053 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 12978985 | 12986182 | + | ClG42_08g0058900.10 | Clacu08g0589 | 254931 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu08g0589 | 1053 | Gene3D | Tetratricopeptide repeat domain | 316 | 444 | IPR011990 | GO:0005515(InterPro) | |
| Clacu08g0589 | 1053 | Gene3D | Tetratricopeptide repeat domain | 874 | 1026 | IPR011990 | GO:0005515(InterPro) | |
| Clacu08g0589 | 1053 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 835 | 869 | IPR002885 | - | |
| Clacu08g0589 | 1053 | Pfam | Pentatricopeptide repeat domain | 225 | 267 | IPR002885 | - | |
| Clacu08g0589 | 1053 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 539 | 573 | IPR002885 | - | |
| Clacu08g0589 | 1053 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 940 | 974 | IPR002885 | - | |
| Clacu08g0589 | 1053 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 730 | 764 | IPR002885 | - | |
| Clacu08g0589 | 1053 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 800 | 834 | IPR002885 | - | |
| Clacu08g0589 | 1053 | Pfam | PPR repeat | 658 | 687 | IPR002885 | - | |
| Clacu08g0589 | 1053 | Pfam | PPR repeat | 300 | 317 | IPR002885 | - | |
| Clacu08g0589 | 1053 | Pfam | PPR repeat | 907 | 932 | IPR002885 | - | |
| Clacu08g0589 | 1053 | Pfam | PPR repeat | 478 | 501 | IPR002885 | - | |
| Clacu08g0589 | 1053 | Pfam | PPR repeat | 767 | 797 | IPR002885 | - | |
| Clacu08g0589 | 1053 | Pfam | PPR repeat | 943 | 972 | IPR002885 | - | |
| Clacu08g0589 | 1053 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 765 | 799 | IPR002885 | - | |
| Clacu08g0589 | 1053 | SUPERFAMILY | HCP-like | 361 | 635 | - | - | |
| Clacu08g0589 | 1053 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 660 | 694 | IPR002885 | - | |
| Clacu08g0589 | 1053 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 574 | 608 | IPR002885 | - | |
| Clacu08g0589 | 1053 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 695 | 729 | IPR002885 | - | |
| Clacu08g0589 | 1053 | Pfam | PPR repeat family | 396 | 440 | IPR002885 | - | |
| Clacu08g0589 | 1053 | Pfam | PPR repeat family | 322 | 370 | IPR002885 | - | |
| Clacu08g0589 | 1053 | Pfam | PPR repeat family | 694 | 743 | IPR002885 | - | |
| Clacu08g0589 | 1053 | Pfam | PPR repeat family | 573 | 622 | IPR002885 | - | |
| Clacu08g0589 | 1053 | Pfam | PPR repeat family | 799 | 847 | IPR002885 | - | |
| Clacu08g0589 | 1053 | Pfam | PPR repeat family | 503 | 552 | IPR002885 | - | |
| Clacu08g0589 | 1053 | NCBIfam | pentatricopeptide repeat | 259 | 292 | IPR002885 | - | |
| Clacu08g0589 | 1053 | NCBIfam | pentatricopeptide repeat | 697 | 731 | IPR002885 | - | |
| Clacu08g0589 | 1053 | NCBIfam | pentatricopeptide repeat | 507 | 540 | IPR002885 | - | |
| Clacu08g0589 | 1053 | NCBIfam | pentatricopeptide repeat | 326 | 359 | IPR002885 | - | |
| Clacu08g0589 | 1053 | NCBIfam | pentatricopeptide repeat | 943 | 975 | IPR002885 | - | |
| Clacu08g0589 | 1053 | NCBIfam | pentatricopeptide repeat | 767 | 801 | IPR002885 | - | |
| Clacu08g0589 | 1053 | NCBIfam | pentatricopeptide repeat | 611 | 637 | IPR002885 | - | |
| Clacu08g0589 | 1053 | NCBIfam | pentatricopeptide repeat | 732 | 766 | IPR002885 | - | |
| Clacu08g0589 | 1053 | NCBIfam | pentatricopeptide repeat | 541 | 575 | IPR002885 | - | |
| Clacu08g0589 | 1053 | NCBIfam | pentatricopeptide repeat | 837 | 863 | IPR002885 | - | |
| Clacu08g0589 | 1053 | NCBIfam | pentatricopeptide repeat | 478 | 505 | IPR002885 | - | |
| Clacu08g0589 | 1053 | NCBIfam | pentatricopeptide repeat | 662 | 695 | IPR002885 | - | |
| Clacu08g0589 | 1053 | NCBIfam | pentatricopeptide repeat | 576 | 610 | IPR002885 | - | |
| Clacu08g0589 | 1053 | NCBIfam | pentatricopeptide repeat | 802 | 835 | IPR002885 | - | |
| Clacu08g0589 | 1053 | NCBIfam | pentatricopeptide repeat | 396 | 427 | IPR002885 | - | |
| Clacu08g0589 | 1053 | Gene3D | Tetratricopeptide repeat domain | 643 | 722 | IPR011990 | GO:0005515(InterPro) | |
| Clacu08g0589 | 1053 | Gene3D | Tetratricopeptide repeat domain | 568 | 639 | IPR011990 | GO:0005515(InterPro) | |
| Clacu08g0589 | 1053 | Gene3D | Tetratricopeptide repeat domain | 493 | 567 | IPR011990 | GO:0005515(InterPro) | |
| Clacu08g0589 | 1053 | Gene3D | Tetratricopeptide repeat domain | 791 | 867 | IPR011990 | GO:0005515(InterPro) | |
| Clacu08g0589 | 1053 | Gene3D | Tetratricopeptide repeat domain | 723 | 790 | IPR011990 | GO:0005515(InterPro) | |
| Clacu08g0589 | 1053 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 504 | 538 | IPR002885 | - | |
| Clacu08g0589 | 1053 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 256 | 290 | IPR002885 | - | |
| Clacu08g0589 | 1053 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 393 | 427 | IPR002885 | - | |
| Clacu08g0589 | 1053 | PANTHER | OS03G0856100 PROTEIN | 454 | 770 | - | - | |
| Clacu08g0589 | 1053 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 221 | 255 | IPR002885 | - | |
| Clacu08g0589 | 1053 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 609 | 639 | IPR002885 | - | |
| Clacu08g0589 | 1053 | Gene3D | Tetratricopeptide repeat domain | 159 | 315 | IPR011990 | GO:0005515(InterPro) | |
| Clacu08g0589 | 1053 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 469 | 503 | IPR002885 | - | |
| Clacu08g0589 | 1053 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 323 | 357 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu08g0589 | - | - | - | - | 0.0 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi5g1146 | . | . | . | . | . | . | . | . | . | Cmo17g00570 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cla08g00440 | Cam08g0873 | Cec08g0452 | Cco08g0574 | Clacu08g0589 | . | Cre08g0412 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cma17g00588 | . | Car17g00544 | Cpe12g00501 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0009746 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 32 |