Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0597 ATGTTATTTTCTCGATCCTTTTTCCGGTCCCAGCTCAAACCCTCCCACATTTCCCGCTATTCTCCAGGTTTTTCTTCCCCGTTTTCCTCTCTTTCACCTTCTTCCGCAGCCTCAATTGAAGCCGAGAGGCTTCTCAGAGATGGGCCCAGGAATAATTGGACCCGACAAGAGATTCGGGACATTTACGACTCTCCCGTGCTCGATCTGCTTTTCCATGGCGCGCAAGTTCATAGGCACACACACAATTTCCGGGAGGTGCAGCAGTGTACTCTCCTTTCAATCAAAACAGGTGGGTGTAGTGAGGATTGTTCCTACTGTCCTCAATCATCGAGATATGACACTGGAGTGAAAGCTCAAAAACTTATGACCAAGGATGTCGTCCTGGAGGCAGCCAAAAAGGCAAAAGAGGCTGGTAGCACAAGATTTTGTATGGGTGCTGCATGGAGAGACACAATAGGAAGAAAAACTAATTTCAATCAGATCCTTGATTATGTAAAAGAAATAAGAGAGATGGGGATGGAGGTCTGCTGCACCCTGGGCATGATAGAGAAGCAACAAGCTATTGACCTCAAAAAGGCAGGCCTAACAGCTTATAACCACAACCTAGATACGTCAAGGGAATACTACCCAAACATTATAACCACGAGGAGTTATGATGAGCGTTTGAAAACCCTAGAATTTGTTCGTGATGCTGGAATCAATGTCTGCTCAGGAGGAATAATTGGGCTTGGAGAGGCAGAAGAGGACCGTGTCGGTTTGCTGCATACCTTGGCAACGCTGCCTACACATCCTGAGAGTGTTCCCATCAACGCACTGGTTGCAGTGAAAGGAACCCCTCTTCAAGATCAAAAACCTGTTGAAATTTGGGAGATGATTCGAATGATCGCTACAGCACGTATCACGATGCCGAAAGCGATGGTAAGGTTGTCAGCAGGTAGAGTGAAGTTCTCAGTGCCCGAGCAGGCGTTATGCTTCCTTGCGGGAGCAAATTCTATCTTCACCGGGGAAAAACTGCTAACGACGCCAAATAATGATTTTGATGCTGATCAACTCATGTTCAAGATGCTGGGTCTGATTCCAAAAGCTCCCAGTTTCACTGAAGATGTTGAGAAAGCCCCTGAAGAAGAGTCATTACAAGAAGCTGCTTCCAGTTCGTAA 1158 46.55 MLFSRSFFRSQLKPSHISRYSPGFSSPFSSLSPSSAASIEAERLLRDGPRNNWTRQEIRDIYDSPVLDLLFHGAQVHRHTHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMTKDVVLEAAKKAKEAGSTRFCMGAAWRDTIGRKTNFNQILDYVKEIREMGMEVCCTLGMIEKQQAIDLKKAGLTAYNHNLDTSREYYPNIITTRSYDERLKTLEFVRDAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALVAVKGTPLQDQKPVEIWEMIRMIATARITMPKAMVRLSAGRVKFSVPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKMLGLIPKAPSFTEDVEKAPEEESLQEAASSS 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13237937 13242482 + ClG42_08g0059700.10 Clacu08g0597 254939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0597 385 SFLD biotin synthase 49 365 IPR024177 -
Clacu08g0597 385 Pfam Radical SAM superfamily 94 255 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Clacu08g0597 385 SMART MiaB 89 297 IPR006638 GO:0003824(InterPro)|GO:0051536(InterPro)
Clacu08g0597 385 SMART BATS_2 268 360 IPR010722 -
Clacu08g0597 385 SFLD Radical SAM 49 365 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Clacu08g0597 385 Hamap Biotin synthase [bioB]. 51 361 IPR002684 GO:0004076(InterPro)|GO:0009102(InterPro)
Clacu08g0597 385 ProSiteProfiles Radical SAM core domain profile. 84 313 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Clacu08g0597 385 PIRSF Biotin_synth 35 367 IPR024177 -
Clacu08g0597 385 SUPERFAMILY Radical SAM enzymes 51 361 - -
Clacu08g0597 385 FunFam Biotin synthase 50 363 - -
Clacu08g0597 385 NCBIfam biotin synthase BioB 52 358 IPR002684 GO:0004076(InterPro)|GO:0009102(InterPro)
Clacu08g0597 385 MobiDBLite consensus disorder prediction 366 385 - -
Clacu08g0597 385 Gene3D Aldolase class I 50 362 IPR013785 -
Clacu08g0597 385 CDD Radical_SAM 96 296 - -
Clacu08g0597 385 Pfam Biotin and Thiamin Synthesis associated domain 268 358 IPR010722 -
Clacu08g0597 385 PANTHER BIOTIN SYNTHASE 33 381 IPR002684 GO:0004076(InterPro)|GO:0004076(PANTHER)|GO:0005739(PANTHER)|GO:0009102(PANTHER)|GO:0009102(InterPro)|GO:0051537(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0597 K01012 - - csv:101222084 687.952
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1189 . . . . . . . . . Cmo17g00574 . . . . . . . . . . . . . . Cla08g00450 Cam08g0879 Cec08g0460 Cco08g0582 Clacu08g0597 . Cre08g0419 Cone14ag0578 . . . . . . . . Blo07g00095 Bda11g00466 . . Bpe13g00733 . Bma06g01424 . . . . Cma17g00592 . Car17g00547 Cpe12g00504 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010238 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 31