Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0598 ATGATGTTCTTCTGGACGAAGAGCAATTCGTCAAATCTCAACTTATTGTTCTTCTCAGAGCTCCAATTCCTTTTCAGTAAAGTGTTCATTCAGAATTGCATCGATATCGTTGTTTTTGTCCGTGATGAATTATTGCTTATTCGCTGCATCTACAGGATTTCTATCGGTTTGGTGATAGGAATTTCTTGCAAATATCGAATTGAAAGGTTCACAACGGCGTCGGCTGTGGAATTGCGTGGTTCTGACTGTTTGGTAGGTCTGGAGTGCTTCCTTAACGTTGTTAGGGCCCTCGGAATGGGATCATGCCTCTCTGGGGACCGGAACAAGCGAACGATCCCTTATTCTGAGCTTGCTTCCACTTCTCGTGATGATGGCGTTATTAGGCGAAGGAATTCCAAGAGGAAGATTACGAGAAAGGGTTCTTCCCCCTCGAATGACTCTTCAAGGGAGATGTCGCTTCATCGAGTTCCCGGCCGGATGTTTTTGAATGGAACAACTGATCATGCCTCGCTCTTTACTAGGCAAGGCAAGAAAGGCGTCAATCAGGATGCTATGATTGTTTGGGAGAATTTTGGTTCAAAAGAAGATACAATATTTTGTGGAGTCTTTGATGGACACGGTCCCTTTGGCCATATGGTTGCAAAGAAAGTCAGAGATTCTCTTCCTCTAAAACTGAATGCTCAGTGGGAGTTGGATGCTACCAGAAAGGAAGGGCAAAATGACATCAGATGTCAAGTGTCTCCACCAATGCTGGTTAACAAGGACTCTGGAACCTCTCATTGTGATCCTGGTCATCAGGGAAGTTACAGTGACATTTATATCATGCTGAAAGAGTCTTTTCTAAAGGCTTTTAAGGTGATGGACAAGGAGCTTAAACTACATCCATATATCGATTGCTATACCAGTGGTACAACATCAGTTGCATTGGTCAAACAGGGTCGGGATCTTATCATTGGAAATGTTGGGGACTCGCGGGCTGTTTTAGGTACCAGAGATGAATCTAACTCTCTCATTGCAGTTCAGTTGACTGTGGACCTCAAGCCAAATCTTCCAAGGGAAGCTGAAAGGATCAGACTTTGCAAAGGAAGAATCTTTGCTCTTCAAAATGAGCCTGAGATTTTTCGGGTTTGGCTTCCCAACAATGATTCTCCTGGGCTTGCTATGGCCAGAGCCTTCGGAGATTTCTGTTTGAAAGATTTTGGTGTGATAGCCGTGCCTGATGTTTCTTATTGTCATCTTACTGAGAACGATGAGTTTGTGGTACTGGCTACCGATGGGGTTTGGGATGTTCTCTCAAACAAAGAGGTTGTGGCAATTGTTGCATCATCTCCGAGATCTTCTGCAGCTCGTATCCTTGTGGACTCAGCTACTCGAGCATGGAGAATAAAGTACCCTACTGCCAAGGTGGATGATTGTGCCGTAGTCTGCCTGTACCTGGACTCTAATGAAAGTACTGCAGTAACAGCTAAAAAAAAGGAGTTCACCAATGACATGGAAACTTAG 1503 44.24 MMFFWTKSNSSNLNLLFFSELQFLFSKVFIQNCIDIVVFVRDELLLIRCIYRISIGLVIGISCKYRIERFTTASAVELRGSDCLVGLECFLNVVRALGMGSCLSGDRNKRTIPYSELASTSRDDGVIRRRNSKRKITRKGSSPSNDSSREMSLHRVPGRMFLNGTTDHASLFTRQGKKGVNQDAMIVWENFGSKEDTIFCGVFDGHGPFGHMVAKKVRDSLPLKLNAQWELDATRKEGQNDIRCQVSPPMLVNKDSGTSHCDPGHQGSYSDIYIMLKESFLKAFKVMDKELKLHPYIDCYTSGTTSVALVKQGRDLIIGNVGDSRAVLGTRDESNSLIAVQLTVDLKPNLPREAERIRLCKGRIFALQNEPEIFRVWLPNNDSPGLAMARAFGDFCLKDFGVIAVPDVSYCHLTENDEFVVLATDGVWDVLSNKEVVAIVASSPRSSAARILVDSATRAWRIKYPTAKVDDCAVVCLYLDSNESTAVTAKKKEFTNDMET 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13261460 13265659 - ClG42_08g0059800.10 Clacu08g0598 254940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0598 500 Gene3D - 163 481 IPR036457 -
Clacu08g0598 500 SUPERFAMILY PP2C-like 167 480 IPR036457 -
Clacu08g0598 500 CDD PP2Cc 168 479 IPR001932 -
Clacu08g0598 500 SMART PP2C_4 157 477 IPR001932 -
Clacu08g0598 500 Pfam Protein phosphatase 2C 180 453 IPR001932 -
Clacu08g0598 500 PANTHER PROTEIN PHOSPHATASE 144 478 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu08g0598 500 ProSiteProfiles PPM-type phosphatase domain profile. 168 479 IPR001932 -
Clacu08g0598 500 MobiDBLite consensus disorder prediction 128 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0598 Clacu-Chr8:13261460 Clacu11g1155 Clacu-Chr11:16443496 1.70E-134 dispersed
Clacu08g0598 Clacu-Chr8:13261460 Clacu02g0125 Clacu-Chr2:1330347 4.80E-108 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0598 - - - 0.0