Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0621 ATGAACGTACCGACAGAGGCTTCCAGAAATCGAATTCCGAATTTGGAATCATACCAGGATCAAAATCAGCTGCCCACCGTCTCAGAATCTTCGTTTGATTCTATTGCTTTTTTAGCTCAATCTGCGCTGACTTTTGTTCTACGTGTTCCTGCTGCTTCATTCACGAGTGTCCCACGTTCTTGCCACTCCAAAACGCCACAGAACTTCAGAGTTTTATGTTCGGCTTTGGAAATGGGGCAGAGTTCGAAGAAGAAGCGGCGTGGTGGGGGAAGGGGTGGGAAGAGAAGCAAGGGAAGGACGCCACTGACAGATTACTCGTTCAGTGGTGAAGAGAGCGAGCTTATCACAGAAGAGATCACTGCCTTGTGTGCGATCTTTCAAGAAGACTGCAAAGTTGTCACTGGCCCATCTCCTCAAGTTACCATCAAACTTAAACCATATTCAAATGACATGGGATTCGAAGATTTGGATGTATCTGCTCTTCTTTCGGTGAAGTACTTGCCTGGATACCCATACAAATGCCCAAAGTTGCTTATATCCCCGGAGAGAGGTTTGGCAAAAGGTGACACTGAAAAGCTGCTTTCTCTTCTCCATGAACAGGCAAATTATAACGCTCGAGAGGGAAGGATCATGGTTTTCAATTTGGCAGAGGCTGCTCAGGAATTCTTGTCCGAAATAGTAACTACAGGAGAATCAAATGAATTTGTTGGCTGTTCTCATACGGCTAGCACTTCTCAACTGCTTCCAGACAAGGTAACTTCAAATGAGAAGAAAGGACCTTATGTTCATGGCTATGTAGACCTCTTCAGTGGTTCTGGGGAGTTGTGGAGCTGGAGCTTTGACATGGATGAGAAGCTCAACACCCAAGCACAACCTCTTGTAGCTAATAGCTTGAAACTAGGAACAGTCCAACATAAGAAGCTTGATCAAGTTCAAAACTTATTGGCTCGGCAAAACTCAAAGCGAGGTGAATTATTGTCTCCTTCCTCTAACCTAGGTACCCTCGAGGAAGAAACTGAAGTGGACAGTCGGAGCATAAGTTCTTCTAGTTCAAGAAGATCATTAATCGTACAGAAGGATGAAGATGGTATTGAAGGTGAGAAGCAGCATGAAGTCCTTATATCCAGACGAGATTCTATTCTCACACATGATGTTGCTGAAGGCGATGGTCATGGATCTGAAAGCGAGCCTTCAGACTGGTCTTTTGCTTCCTTGAGTAATGAACAAGAGTCCCAAACTACTGAGAGGGATATAATGATGGTTCATCTGCTCCATCTTGCATGTGCCCCTAAAGGACCATTGGCTGATGCTTTGCCAGAATTGGCATCTGAACTTTACAATTTGGGGGTCCTGTCAAAAGTGGCTCTGGATTTGGCTTCTAAACCATCTTCTGTGTTTCATAAAAAGTTTGAGACTGCTTTCCAGGAACAGATGAATGCTACTAGTTTCTCCCAGTTTTGGAATCCTTCTGATTTTGGTGGTCCAACATCTTCTCAACTAAGTTCTCGGTATCTTAACGATTTTGAGGAGCTAAAGCCCCTTGGTCATGGTGGTTTTGGACATGTGGTATTATGCAAGAACAAATTAGATGGACGGCATTATGCTGTGAAAAAAATTCGCCTCAAGGACAAGATATTGCCCGTAAATGACCGCATCTTAAGGGAGGTGGCAACTCTTTCCCGTTTGCAACATCAACATGTTGTTCGGTATTATCAGGCATGGTATGAAAGTGGTGTTTCTGATTCTTATGGAGAGGTGGCTTGGGGTTCGATGACTCCATTGAGTTCTACTTTCAGCTATAAAGGTGCAAGTGCAACAGATACAGAACATGAGAATAAGATGGAATCAACATATCTCTATATCCAAATGGAATATTGCCCTAGGACTCTTCGCCAGGTTTTTGAATCATATACTCATTTTGATAAAGAATTGGCATGGCATTTATTCCATCAAATTGTGGAAGGTCTGGCACATATACATGGACAAGGGATCATTCATCGAGATTTAACTCCAAGTAACATTTTCTTTGATGCCCGCAATGATATCAAAATCGGGGATTTTGGTCTTGCTAAGTTCTTGAAGCTGGAGCAATTAGATCAAGATGTTGGCGTTCCTCTAGATACAACTGGTGTTTCAATTGATGGTACTGGTCAAGTTGGGACCTACTTTTACACAGCACCTGAAATTGAACAAGGATGGCCAAAGATTGATGAAAAAGCTGATATGTACAGCTTAGGGATTGTCTTTTTTGAACTCTGGCACCCTTTTGGAACTGCGATGGAAAGACACCTTGTTCTATCTGATTTGAAGCAGAAAGGAGAGCTTCCAACTGCTTGGGTTACTGAATTTTCTGAACAAGCATCCTTGTTACGACGTTTAATGTCTCAGAGTCCATCCGAGCGTCCTTCAGCCTTGGAACTTCTCCAGCATGCCTTTCCTCCAAGAATGGAGAACCAATTGTTAGATAACATTCTAAGGACAATGAAATCATCGGAGGACTCAAGTATATATGATAGAGTTGTTAATGCTATTTTCGATGAAGAGACATTAGTGATGAAAGATGACAGACATGATGGTGGTACTGCCCCTATCCAGTACACAGATTTGGGCACTGACGTTCGTGATCATGTCATTGACGCCACAAGGGAGATGTTCAGGCTGCATTGTGCAAAGCATTTGGAAACAAGTTCCATGTATTTGTTGGATGGCTCTACACAAATCAATAGGAACACGGTCAAACTTTTGAGCCATGGAGGAGATATACTTGAACTCTGCCATGAGCTGCGTTTACCTTTTCTTAATTGGCTTGTCTCCAGTCAGAAATCTTCATTTAAACGCTATGATATATCGTGCGTCTATAGAAGGGCAATTGGACATTCACCTCCAAACCGATACCTTCAGGGTGATTTTGATATCATTGGGGGTACATCAGCTTTGACTGAGGCAGAGGTTATCAAGGTGACTGTGGACGTTATTTCATATTTTTTTAATTCAGATTCTTGTGATATACACTTAAATCATGGAGATTTGTTGAATGCTATTTGGTCTTGGGTTGGTGTCAAGGCAGAACATAGACATAAAGTGGCCGAGCTGCTTTCAATGCTGGTATCCTTACGTCCTCAATCTTCTGAGAGGAAATCAATGTGGGTTGTGATAAGGCGCCAACTATTACAGGAACTCAAATTAGCACAAGCTGTTGTAAATAGATTGCAGACTGTAGTTTTCAGATTCTGTGGTGCAGTGGATCAGGCACTTCCTAGATTGAGGGGAGCACTTCCAACAGATAAACCAATTCGTAAAGCACTTGATGAGTTGTTAAACCTTTTCAACCACTTGAGAGTGTGGAGGCTTGAAACAAATGTTTACATAGATGCCTTAATGTCACCAACTGAGGGTTATCATCGAGATATATTTTTCCAGGTATACTTAACAAAGGAAAATAATCCTGGTTCACATCCCGAAGGTGCATTGCTTGCTATTGGTGGCCGCTATGACTACTTGCTGCAACAAATGTGGAGCCGTTCATATAAAAGTACCCCTCCTGGTGGTGTCGGGACCAGCATTGCATTAGAGACTATAATTCAGCATTCTGCTGTAGATTTGAAGCCCATCCGAAATGAGGGGAACACTAGTGTCCTGATTTGCTCACGAGGAGGAGGTGGACTATTGTTAGAACGCATGGAACTTGTTGCGGAGCTATGGGAGGAGAAGATTAAGGCTCAACTTGTCCCTACACCTGATCCCAGCCTCACAGAGCAGTATGAATATGCTAACGAGCATGACATAAAATGTCTTGTTATTATTACAGACTCTGGTGTATCTAACACAGGTTCAGTGAAGGTTCGACATCTAGAACTCAAAAAGGAGAAGGAAGTCAAACGCACATCCATTGTCAAGTTTCTCCATGAGGCAATGGCAAGCCAGTTTAAAAATCCTCTCATTTGGAATTAG 3951 42.67 MNVPTEASRNRIPNLESYQDQNQLPTVSESSFDSIAFLAQSALTFVLRVPAASFTSVPRSCHSKTPQNFRVLCSALEMGQSSKKKRRGGGRGGKRSKGRTPLTDYSFSGEESELITEEITALCAIFQEDCKVVTGPSPQVTIKLKPYSNDMGFEDLDVSALLSVKYLPGYPYKCPKLLISPERGLAKGDTEKLLSLLHEQANYNAREGRIMVFNLAEAAQEFLSEIVTTGESNEFVGCSHTASTSQLLPDKVTSNEKKGPYVHGYVDLFSGSGELWSWSFDMDEKLNTQAQPLVANSLKLGTVQHKKLDQVQNLLARQNSKRGELLSPSSNLGTLEEETEVDSRSISSSSSRRSLIVQKDEDGIEGEKQHEVLISRRDSILTHDVAEGDGHGSESEPSDWSFASLSNEQESQTTERDIMMVHLLHLACAPKGPLADALPELASELYNLGVLSKVALDLASKPSSVFHKKFETAFQEQMNATSFSQFWNPSDFGGPTSSQLSSRYLNDFEELKPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKILPVNDRILREVATLSRLQHQHVVRYYQAWYESGVSDSYGEVAWGSMTPLSSTFSYKGASATDTEHENKMESTYLYIQMEYCPRTLRQVFESYTHFDKELAWHLFHQIVEGLAHIHGQGIIHRDLTPSNIFFDARNDIKIGDFGLAKFLKLEQLDQDVGVPLDTTGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWHPFGTAMERHLVLSDLKQKGELPTAWVTEFSEQASLLRRLMSQSPSERPSALELLQHAFPPRMENQLLDNILRTMKSSEDSSIYDRVVNAIFDEETLVMKDDRHDGGTAPIQYTDLGTDVRDHVIDATREMFRLHCAKHLETSSMYLLDGSTQINRNTVKLLSHGGDILELCHELRLPFLNWLVSSQKSSFKRYDISCVYRRAIGHSPPNRYLQGDFDIIGGTSALTEAEVIKVTVDVISYFFNSDSCDIHLNHGDLLNAIWSWVGVKAEHRHKVAELLSMLVSLRPQSSERKSMWVVIRRQLLQELKLAQAVVNRLQTVVFRFCGAVDQALPRLRGALPTDKPIRKALDELLNLFNHLRVWRLETNVYIDALMSPTEGYHRDIFFQVYLTKENNPGSHPEGALLAIGGRYDYLLQQMWSRSYKSTPPGGVGTSIALETIIQHSAVDLKPIRNEGNTSVLICSRGGGGLLLERMELVAELWEEKIKAQLVPTPDPSLTEQYEYANEHDIKCLVIITDSGVSNTGSVKVRHLELKKEKEVKRTSIVKFLHEAMASQFKNPLIWN 1316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14321214 14409459 + ClG42_08g0062100.10 Clacu08g0621 254963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0621 1316 Gene3D Transferase(Phosphotransferase) domain 1 628 822 - -
Clacu08g0621 1316 ProSitePatterns Tyrosine protein kinases specific active-site signature. 664 676 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g0621 1316 ProSiteProfiles Protein kinase domain profile. 508 813 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0621 1316 Coils Coil 1053 1073 - -
Clacu08g0621 1316 Pfam RWD domain 113 223 IPR006575 GO:0005515(InterPro)
Clacu08g0621 1316 PANTHER HISTIDYL-TRNA SYNTHETASE 639 1310 - GO:0003723(PANTHER)|GO:0004821(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006427(PANTHER)|GO:0032543(PANTHER)
Clacu08g0621 1316 SUPERFAMILY Protein kinase-like (PK-like) 504 814 IPR011009 -
Clacu08g0621 1316 SUPERFAMILY Class II aaRS ABD-related 1212 1306 - -
Clacu08g0621 1316 Pfam Anticodon binding domain of tRNAs 1211 1308 IPR024435 -
Clacu08g0621 1316 FunFam Histidine--tRNA ligase, cytoplasmic 1207 1306 - -
Clacu08g0621 1316 ProSitePatterns Protein kinases ATP-binding region signature. 514 538 IPR017441 GO:0005524(InterPro)
Clacu08g0621 1316 Gene3D Phosphorylase Kinase; domain 1 496 625 - -
Clacu08g0621 1316 MobiDBLite consensus disorder prediction 322 368 - -
Clacu08g0621 1316 MobiDBLite consensus disorder prediction 1 23 - -
Clacu08g0621 1316 SMART RWD2001b 117 226 IPR006575 GO:0005515(InterPro)
Clacu08g0621 1316 FunFam eIF-2-alpha kinase GCN2 864 1200 - -
Clacu08g0621 1316 Gene3D Ubiquitin Conjugating Enzyme 105 233 IPR016135 -
Clacu08g0621 1316 Gene3D Bira Bifunctional Protein; Domain 2 865 1202 IPR045864 -
Clacu08g0621 1316 MobiDBLite consensus disorder prediction 80 105 - -
Clacu08g0621 1316 MobiDBLite consensus disorder prediction 322 336 - -
Clacu08g0621 1316 SUPERFAMILY UBC-like 111 223 IPR016135 -
Clacu08g0621 1316 FunFam eIF-2-alpha kinase GCN2 107 232 - -
Clacu08g0621 1316 Pfam Protein kinase domain 508 812 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0621 1316 SUPERFAMILY Class II aaRS and biotin synthetases 866 1194 IPR045864 -
Clacu08g0621 1316 MobiDBLite consensus disorder prediction 397 413 - -
Clacu08g0621 1316 FunFam eIF-2-alpha kinase GCN2 629 822 - -
Clacu08g0621 1316 Gene3D - 1207 1307 IPR036621 -
Clacu08g0621 1316 FunFam eIF-2-alpha kinase GCN2 496 625 - -
Clacu08g0621 1316 CDD STKc_EIF2AK4_GCN2_rpt2 501 811 - -
Clacu08g0621 1316 ProSiteProfiles RWD domain profile. 117 226 IPR006575 GO:0005515(InterPro)
Clacu08g0621 1316 Pfam Histidyl-tRNA synthetase 960 1178 IPR041715 -
Clacu08g0621 1316 MobiDBLite consensus disorder prediction 385 413 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0621 K16196 - - csv:101207000 2268.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0621 Clacu-Chr8:14321214 Clacu09g0727 Clacu-Chr9:6370679 6.40E-19 dispersed
Clacu08g0621 Clacu-Chr8:14321214 Clacu03g0402 Clacu-Chr3:4459912 1.50E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1208 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00493 Cam08g0910 Cec08g0501 Cco08g0611 Clacu08g0621 . Cre08g0443 . . . . . . . . . . . . . . . . . . . . . Car08g00180 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006684 2 4 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 2 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73738 PF00069 Pkinase 1.90E-51 CL0016 Clacu PK