Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0628 ATGAACCTCACTACTCTTGTTTTCTGGATCATCCAGATCTCCATCCATGCAGTTCCAGTTTTTTCTAAAACCAAAGCGCCAGACGTTTCTGCATTGAATGTGATGTTTAGTAGTTTAAATTCACCTTCACAACTCTCTGGTTGGGGTTCAAGTGGGGGTGATCCATGTGGGGATTCTTGGGAAGGGATCCAATGCTCAGGATCATCTGTCACTGAAATAAGTTTATCAGACTTTGGACTAAGTGGTTCAATGGGTTACCAGCTTTCAAATTTGGCAACTGTCACCTACTTTGATTTGAGCAAGAACAACCTCGATGGTGATATCCCCTATCAACTTCCCCCCAATGCAGTTCACATCGATCTTTCTGGGAACAGCTTCACGGGTAGTGTGCCTTATTCAATTTCTCAGATGGCTGATCTTGAATTTTTAAATCTTGGTCATAATAAGCTTAGCAACCAATTGAGTGACATGTTTGGCAAGCTTTCTAAACTCAAAAGGATGGATCTCTCATACAACTCAATTTCAGGAAACTTACCTCAAAGTTTTAAGAAGCTTTCAAGCCTTACCGTATTGCATATACAAGATAATAAATTTTCAGGTTCAATCAATGTTCTTGCTGACCTTCCACTTGATGATTTGAATGTTGCAAATAACAAATTCACCGGATGGATTCCTGAAAGTCTTGAAGCTATAGATAATTTGGAAACTGTAGGAAATTCATGGTCATCTGGGCCAGCACCACCTCCACCACCAGGGACGGTATCTCCGAAAGGGAAGAACTCGAAGAAGGAGGAGTCGAACGGGAAATCGTCGGTGATAAGTGGGTTAGTGATAGCAGGAATAGCCATGGGAGTTTTAGCAATAATAGCAATAGTGATTGGATTTATGTCAAGAAGGCATAAATCCTTCACTCCTTCCCATTTTCTTGATGAAGACACAAGCCAACACAGATCCTTCACTCCACTCACATCCCAGGAACTCCCAAAGGGAGATTTGTACAATAATAATAATAATAATAATGCTAATAATAATACTAATAATGATAGAAAATCCTTCAATTCTGATGCCTCTGTTGACATAAAAGGTCTAAGTGTTGTTAGGCCACCTCCAGCTCCTTCTGATCCTGTTCAATCCTTCAGTGATAATCAATTTGCAAGCCGTTTGAATTCAAGGAGAAGCACTTCCTTTCGTGCCATTTCTTATTCTTTACTTGATTTGCAAACTGCCACTTCCAATTTTGCCCCTGCTCGCCTTCTCGGTGAGGGTACGATCGGACGTGTTTATAAGGCTAAGTATGGAGATGGAAAGGTATTGGCAGTGAAGAAGATAGATTCATCAGTTTTTCAAGGTAGAAGAACAGAGGAGTTTGGTGAAGTAGTTGGAATAATCTCAAAGCTTCATCACACAAACATTACAGAAGTGGTTGGGTTTTGTTCAGAGCAAGGACATCATTTGCTGGTTTATGAATATTTCATGAATGGTTCACTTCATGAGTTTCTTCATATGTCTGATGACTTTAGTAAACCACTCACTTGGAACACTAGAGTCAGAATTGCTTTGGGGACTGCAAGAGCTCTTGAGTATCTTCACGAAGTTTGCTCACCATCCATAATTCACATGAATATCAAGTCCTCTAATATATTGCTTGATGCGGAACTTAATCCTCGTCTCTCAGATTATGGTTTGGCAACATTTTATAAGCATAGAAGCCAAAACCCTGGAGGTGGATATGATGCTCCAGAATGCCTAAAGGGTTCAAGTTATACAATGAAGAGTGATATTTACAGTTTGGGAGTGGTGATGTTGGAGTTGTTGACGGGGCGGATGCCTTATGACTCTGGGAAAGCCAAAGTGGAACAATGTCTAGTAAGATGGGCAACACCACAGCTACATGACATAGATGCATTGGACAAAATGGTGGATCCTGCCTTGCGAGGTTTATATCCTCCAAAATCAGTGTCTAGATTTGCAGATATCATTGCCCTTTGCGTTCAATCAGAGCCTGAATTTAGGCCTCCCATGTCCGAAGTGGTTCAAGCCTTGGTTACTTTGGTTCAACGATCAAGCATGAATATGAGAGATGATCTTGGAAACTCTCGACGAATGGATGATTATGACTATTAA 2124 40.73 MNLTTLVFWIIQISIHAVPVFSKTKAPDVSALNVMFSSLNSPSQLSGWGSSGGDPCGDSWEGIQCSGSSVTEISLSDFGLSGSMGYQLSNLATVTYFDLSKNNLDGDIPYQLPPNAVHIDLSGNSFTGSVPYSISQMADLEFLNLGHNKLSNQLSDMFGKLSKLKRMDLSYNSISGNLPQSFKKLSSLTVLHIQDNKFSGSINVLADLPLDDLNVANNKFTGWIPESLEAIDNLETVGNSWSSGPAPPPPPGTVSPKGKNSKKEESNGKSSVISGLVIAGIAMGVLAIIAIVIGFMSRRHKSFTPSHFLDEDTSQHRSFTPLTSQELPKGDLYNNNNNNNANNNTNNDRKSFNSDASVDIKGLSVVRPPPAPSDPVQSFSDNQFASRLNSRRSTSFRAISYSLLDLQTATSNFAPARLLGEGTIGRVYKAKYGDGKVLAVKKIDSSVFQGRRTEEFGEVVGIISKLHHTNITEVVGFCSEQGHHLLVYEYFMNGSLHEFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCSPSIIHMNIKSSNILLDAELNPRLSDYGLATFYKHRSQNPGGGYDAPECLKGSSYTMKSDIYSLGVVMLELLTGRMPYDSGKAKVEQCLVRWATPQLHDIDALDKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPMSEVVQALVTLVQRSSMNMRDDLGNSRRMDDYDY 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14696926 14705942 - ClG42_08g0062800.10 Clacu08g0628 254970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0628 707 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 143 686 IPR046959 -
Clacu08g0628 707 Pfam Leucine Rich Repeat 118 137 IPR001611 GO:0005515(InterPro)
Clacu08g0628 707 MobiDBLite consensus disorder prediction 315 353 - -
Clacu08g0628 707 MobiDBLite consensus disorder prediction 238 269 - -
Clacu08g0628 707 Gene3D Phosphorylase Kinase; domain 1 377 490 - -
Clacu08g0628 707 Pfam Protein kinase domain 416 679 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0628 707 Gene3D Transferase(Phosphotransferase) domain 1 491 704 - -
Clacu08g0628 707 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 25 252 - -
Clacu08g0628 707 SUPERFAMILY Protein kinase-like (PK-like) 393 681 IPR011009 -
Clacu08g0628 707 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 491 695 - -
Clacu08g0628 707 SUPERFAMILY L domain-like 27 236 - -
Clacu08g0628 707 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 379 490 - -
Clacu08g0628 707 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Clacu08g0628 707 MobiDBLite consensus disorder prediction 307 383 - -
Clacu08g0628 707 ProSiteProfiles Protein kinase domain profile. 413 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0628 707 Pfam Leucine rich repeat 156 198 IPR001611 GO:0005515(InterPro)
Clacu08g0628 707 Gene3D Ribonuclease Inhibitor 25 255 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0628 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0988 Clacu-Chr1:12894534 Clacu08g0628 Clacu-Chr8:14696926 4.20E-134 dispersed
Clacu02g0132 Clacu-Chr2:1367315 Clacu08g0628 Clacu-Chr8:14696926 1.00E-102 dispersed
Clacu08g0628 Clacu-Chr8:14696926 Clacu09g0150 Clacu-Chr9:1426123 4.50E-136 dispersed
Clacu08g0628 Clacu-Chr8:14696926 Clacu07g1427 Clacu-Chr7:29013938 5.50E-150 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu02g0132 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.5 6.5e-205 711.1
Clacu01g2355 . 17 731 Strubbelig Receptor Gene Family AT4G03390 54.1 1.6e-155 547.0
Clacu09g0150 . 484 778 Strubbelig Receptor Gene Family AT4G03390 58.4 7.5e-92 335.5
Clacu10g1722 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.5 3.8e-186 648.7
Clacu08g0628 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.8e-193 672.9
Clacu09g0150 . 115 781 Strubbelig Receptor Gene Family AT1G78980 50.1 1.3e-122 437.6
Clacu08g0628 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.5e-148 521.5
Clacu01g0988 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.2 1.3e-84 311.2
Clacu10g1722 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.5 3.8e-186 648.7
Clacu02g0132 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.5 6.5e-205 711.1
Clacu01g2355 . 17 731 Strubbelig Receptor Gene Family AT4G03390 54.1 1.6e-155 547.0
Clacu09g0150 . 484 778 Strubbelig Receptor Gene Family AT4G03390 58.4 7.5e-92 335.5
Clacu08g0628 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.5e-148 521.5
Clacu08g0628 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.8e-193 672.9
Clacu09g0150 . 115 781 Strubbelig Receptor Gene Family AT1G78980 50.1 1.3e-122 437.6
Clacu09g0150 . 109 803 Strubbelig Receptor Gene Family AT1G53730 61.1 1.7e-183 639.8
Clacu07g1427 . 103 916 Strubbelig Receptor Gene Family AT1G53730 51.0 3.2e-182 635.6
Clacu08g0628 . 20 693 Strubbelig Receptor Gene Family AT1G53730 50.4 1.3e-154 543.9
Clacu01g0988 . 7 689 Strubbelig Receptor Gene Family AT1G53730 50.9 4.4e-147 518.8
Clacu09g0150 . 109 793 Strubbelig Receptor Gene Family AT3G14350 55.5 2.2e-164 576.2
Clacu01g0988 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.2 4.2e-177 618.2
Clacu07g1427 . 595 923 Strubbelig Receptor Gene Family AT4G22130 63.4 4.7e-120 428.7
Clacu09g0150 . 482 795 Strubbelig Receptor Gene Family AT4G22130 64.6 6.4e-117 418.3
Clacu02g0132 . 485 796 Strubbelig Receptor Gene Family AT4G22130 58.8 6.0e-107 385.2
Clacu08g0628 . 360 707 Strubbelig Receptor Gene Family AT4G22130 52.4 1.2e-99 360.9
Clacu10g1722 . 387 709 Strubbelig Receptor Gene Family AT4G22130 51.7 9.2e-92 334.7
Clacu01g2355 . 464 731 Strubbelig Receptor Gene Family AT4G22130 60.0 1.3e-90 330.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010758 0 1 1 1 0 1 2 0 0 1 1 1 2 1 0 2 1 1 2 1 1 0 1 0 0 1 1 0 0 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73739 PF00069 Pkinase 2.30E-43 CL0016 Clacu PK