Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0628 ATGAACCTCACTACTCTTGTTTTCTGGATCATCCAGATCTCCATCCATGCAGTTCCAGTTTTTTCTAAAACCAAAGCGCCAGACGTTTCTGCATTGAATGTGATGTTTAGTAGTTTAAATTCACCTTCACAACTCTCTGGTTGGGGTTCAAGTGGGGGTGATCCATGTGGGGATTCTTGGGAAGGGATCCAATGCTCAGGATCATCTGTCACTGAAATAAGTTTATCAGACTTTGGACTAAGTGGTTCAATGGGTTACCAGCTTTCAAATTTGGCAACTGTCACCTACTTTGATTTGAGCAAGAACAACCTCGATGGTGATATCCCCTATCAACTTCCCCCCAATGCAGTTCACATCGATCTTTCTGGGAACAGCTTCACGGGTAGTGTGCCTTATTCAATTTCTCAGATGGCTGATCTTGAATTTTTAAATCTTGGTCATAATAAGCTTAGCAACCAATTGAGTGACATGTTTGGCAAGCTTTCTAAACTCAAAAGGATGGATCTCTCATACAACTCAATTTCAGGAAACTTACCTCAAAGTTTTAAGAAGCTTTCAAGCCTTACCGTATTGCATATACAAGATAATAAATTTTCAGGTTCAATCAATGTTCTTGCTGACCTTCCACTTGATGATTTGAATGTTGCAAATAACAAATTCACCGGATGGATTCCTGAAAGTCTTGAAGCTATAGATAATTTGGAAACTGTAGGAAATTCATGGTCATCTGGGCCAGCACCACCTCCACCACCAGGGACGGTATCTCCGAAAGGGAAGAACTCGAAGAAGGAGGAGTCGAACGGGAAATCGTCGGTGATAAGTGGGTTAGTGATAGCAGGAATAGCCATGGGAGTTTTAGCAATAATAGCAATAGTGATTGGATTTATGTCAAGAAGGCATAAATCCTTCACTCCTTCCCATTTTCTTGATGAAGACACAAGCCAACACAGATCCTTCACTCCACTCACATCCCAGGAACTCCCAAAGGGAGATTTGTACAATAATAATAATAATAATAATGCTAATAATAATACTAATAATGATAGAAAATCCTTCAATTCTGATGCCTCTGTTGACATAAAAGGTCTAAGTGTTGTTAGGCCACCTCCAGCTCCTTCTGATCCTGTTCAATCCTTCAGTGATAATCAATTTGCAAGCCGTTTGAATTCAAGGAGAAGCACTTCCTTTCGTGCCATTTCTTATTCTTTACTTGATTTGCAAACTGCCACTTCCAATTTTGCCCCTGCTCGCCTTCTCGGTGAGGGTACGATCGGACGTGTTTATAAGGCTAAGTATGGAGATGGAAAGGTATTGGCAGTGAAGAAGATAGATTCATCAGTTTTTCAAGGTAGAAGAACAGAGGAGTTTGGTGAAGTAGTTGGAATAATCTCAAAGCTTCATCACACAAACATTACAGAAGTGGTTGGGTTTTGTTCAGAGCAAGGACATCATTTGCTGGTTTATGAATATTTCATGAATGGTTCACTTCATGAGTTTCTTCATATGTCTGATGACTTTAGTAAACCACTCACTTGGAACACTAGAGTCAGAATTGCTTTGGGGACTGCAAGAGCTCTTGAGTATCTTCACGAAGTTTGCTCACCATCCATAATTCACATGAATATCAAGTCCTCTAATATATTGCTTGATGCGGAACTTAATCCTCGTCTCTCAGATTATGGTTTGGCAACATTTTATAAGCATAGAAGCCAAAACCCTGGAGGTGGATATGATGCTCCAGAATGCCTAAAGGGTTCAAGTTATACAATGAAGAGTGATATTTACAGTTTGGGAGTGGTGATGTTGGAGTTGTTGACGGGGCGGATGCCTTATGACTCTGGGAAAGCCAAAGTGGAACAATGTCTAGTAAGATGGGCAACACCACAGCTACATGACATAGATGCATTGGACAAAATGGTGGATCCTGCCTTGCGAGGTTTATATCCTCCAAAATCAGTGTCTAGATTTGCAGATATCATTGCCCTTTGCGTTCAATCAGAGCCTGAATTTAGGCCTCCCATGTCCGAAGTGGTTCAAGCCTTGGTTACTTTGGTTCAACGATCAAGCATGAATATGAGAGATGATCTTGGAAACTCTCGACGAATGGATGATTATGACTATTAA 2124 40.73 MNLTTLVFWIIQISIHAVPVFSKTKAPDVSALNVMFSSLNSPSQLSGWGSSGGDPCGDSWEGIQCSGSSVTEISLSDFGLSGSMGYQLSNLATVTYFDLSKNNLDGDIPYQLPPNAVHIDLSGNSFTGSVPYSISQMADLEFLNLGHNKLSNQLSDMFGKLSKLKRMDLSYNSISGNLPQSFKKLSSLTVLHIQDNKFSGSINVLADLPLDDLNVANNKFTGWIPESLEAIDNLETVGNSWSSGPAPPPPPGTVSPKGKNSKKEESNGKSSVISGLVIAGIAMGVLAIIAIVIGFMSRRHKSFTPSHFLDEDTSQHRSFTPLTSQELPKGDLYNNNNNNNANNNTNNDRKSFNSDASVDIKGLSVVRPPPAPSDPVQSFSDNQFASRLNSRRSTSFRAISYSLLDLQTATSNFAPARLLGEGTIGRVYKAKYGDGKVLAVKKIDSSVFQGRRTEEFGEVVGIISKLHHTNITEVVGFCSEQGHHLLVYEYFMNGSLHEFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCSPSIIHMNIKSSNILLDAELNPRLSDYGLATFYKHRSQNPGGGYDAPECLKGSSYTMKSDIYSLGVVMLELLTGRMPYDSGKAKVEQCLVRWATPQLHDIDALDKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPMSEVVQALVTLVQRSSMNMRDDLGNSRRMDDYDY 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14696926 14705942 - ClG42_08g0062800.10 Clacu08g0628 254970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0628 707 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 143 686 IPR046959 -
Clacu08g0628 707 Pfam Leucine Rich Repeat 118 137 IPR001611 GO:0005515(InterPro)
Clacu08g0628 707 MobiDBLite consensus disorder prediction 315 353 - -
Clacu08g0628 707 MobiDBLite consensus disorder prediction 238 269 - -
Clacu08g0628 707 Gene3D Phosphorylase Kinase; domain 1 377 490 - -
Clacu08g0628 707 Pfam Protein kinase domain 416 679 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0628 707 Gene3D Transferase(Phosphotransferase) domain 1 491 704 - -
Clacu08g0628 707 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 25 252 - -
Clacu08g0628 707 SUPERFAMILY Protein kinase-like (PK-like) 393 681 IPR011009 -
Clacu08g0628 707 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 491 695 - -
Clacu08g0628 707 SUPERFAMILY L domain-like 27 236 - -
Clacu08g0628 707 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 379 490 - -
Clacu08g0628 707 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Clacu08g0628 707 MobiDBLite consensus disorder prediction 307 383 - -
Clacu08g0628 707 ProSiteProfiles Protein kinase domain profile. 413 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0628 707 Pfam Leucine rich repeat 156 198 IPR001611 GO:0005515(InterPro)
Clacu08g0628 707 Gene3D Ribonuclease Inhibitor 25 255 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0988 Clacu-Chr1:12894534 Clacu08g0628 Clacu-Chr8:14696926 4.20E-134 dispersed
Clacu02g0132 Clacu-Chr2:1367315 Clacu08g0628 Clacu-Chr8:14696926 1.00E-102 dispersed
Clacu08g0628 Clacu-Chr8:14696926 Clacu09g0150 Clacu-Chr9:1426123 4.50E-136 dispersed
Clacu08g0628 Clacu-Chr8:14696926 Clacu07g1427 Clacu-Chr7:29013938 5.50E-150 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73739 PF00069 Pkinase 2.30E-43 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0628 - - - 0.0