Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0643 ATGAGCTCCAATCATTTAGAGATGATGAGCAACCATTTTACAGTGGAGAACTCCGATCAAAGTGATCATCAAGGACCAATCAGCTCCATTAATCCTTTTTTCACTGAGAGCTTTTGTCTTGAAAAGTTTGCTTATTTTAATGAAATCCCTAGCTGTGTTCCACCTCCTCTTTACTCTTCATTTCCTACATTTAACAGAGAAGATCCCAAGAGGTTGGGAGGAAGAAAGAGGAAAAGAGAAAATGAAAGGGATGAGGAGAAGCCAAAAGAAGTGATTCATGTGCGGGCAAAAAGAGGTGAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTAAGAAGAGAGAAAATAAACCAGAGACTGAGGTTCTTACAGGACTTGGTTCCAGGATGCTACAAGACAATGGGAATGGCAGTTATGTTGGATGTGATCATAAATTACATCCAATCTCTGCAGAATCAGATTGAGTTTCTCTCCATGAAGCTTTCAGTTGCTAGTCGCTACTATGATTTCAACAACAGCTCGGAGACTAATGGCCCCGAGATAATGCAGGCAACAAATGGGTGTGATGATATTCAAGAGATGCAGAGGATTGTACTTAGAGAAGAAGGGTATGGAGGGCCCTCTTACCACCACTCTACTTTTCCACCTCTCTAA 654 41.44 MSSNHLEMMSNHFTVENSDQSDHQGPISSINPFFTESFCLEKFAYFNEIPSCVPPPLYSSFPTFNREDPKRLGGRKRKRENERDEEKPKEVIHVRAKRGEATDSHSLAERVRREKINQRLRFLQDLVPGCYKTMGMAVMLDVIINYIQSLQNQIEFLSMKLSVASRYYDFNNSSETNGPEIMQATNGCDDIQEMQRIVLREEGYGGPSYHHSTFPPL 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15077993 15083568 + ClG42_08g0064300.10 Clacu08g0643 254985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0643 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 168 IPR036638 GO:0046983(InterPro)
Clacu08g0643 217 CDD bHLH_AtBPE_like 90 174 - -
Clacu08g0643 217 Gene3D - 97 168 IPR036638 GO:0046983(InterPro)
Clacu08g0643 217 MobiDBLite consensus disorder prediction 68 90 - -
Clacu08g0643 217 SMART finulus 106 156 IPR011598 GO:0046983(InterPro)
Clacu08g0643 217 Pfam Helix-loop-helix DNA-binding domain 104 151 IPR011598 GO:0046983(InterPro)
Clacu08g0643 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 150 IPR011598 GO:0046983(InterPro)
Clacu08g0643 217 MobiDBLite consensus disorder prediction 64 90 - -
Clacu08g0643 217 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 75 175 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1171 Clacu-Chr4:25892325 Clacu08g0643 Clacu-Chr8:15077993 1.40E-37 dispersed
Clacu05g1315 Clacu-Chr5:13565226 Clacu08g0643 Clacu-Chr8:15077993 4.00E-31 dispersed
Clacu07g1674 Clacu-Chr7:31457004 Clacu08g0643 Clacu-Chr8:15077993 3.90E-08 dispersed
Clacu08g0643 Clacu-Chr8:15077993 Clacu09g0843 Clacu-Chr9:7767241 1.10E-27 dispersed
Clacu08g0643 Clacu-Chr8:15077993 Clacu06g1579 Clacu-Chr6:26672764 3.90E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48133 PF00010 HLH 6.40E-06 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0643 - - - 0.0