Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0656 ATGGTTTACTCCGACAAAATGCAAGAAATTGCATCCAAAATGGGTTTCACACTCTCCGATTTCGCCGATACTTTGGAACAAGAACGCCGTAAAGTCCTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGCAGCTCGTTTCCCATGCCATTGATTGTTGCAGGCAGCAGTTATCGGAGACGACGACGGAAAATCGTCAATCGGAATGCTCCGAGCAGACTTCCAGTGACATGGGTCCGGTTCTTGAGGAGTTCATTCCGATTAACAGAAATGGGGTTTCTGATTTTGAACAAACGGAGAAAAATAAGAATAACGACGACTCTGATTTAAACAATTTGAATTTGGCTCCGTCTGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACTTCAGATCCTCCTCCCCTGAATCAGGACCAGGCAGAGAACACGCCGGTTGTTGACGTCAACAGAAATGGCGGCGCTTTCCGGCCGTTTCAGAAGGAGAAAACCGGTAGCGCCGGCGGGGGAGGTGGGGCATCCTCGTCTTCAGCTCCGGCTCCGGCTGCGGAAACGAGCTCGACGACGGAGACGGGGTCAGGCGGAAGTAGCCGACGGGAAGAGAAGGAAGCTCAGAATCAGAGGAAACAGAGACGGTGCTGGTCGCCGGAGCTGCACCGGCGGTTCCTTCATGCACTTCAGCAGCTCGGAGGTTCCCATGTGGCGACGCCGAAGCAAATAAGGGAATTGATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATCTACAGAAGTATCGTCTGCACACGAGACGGCCAAGTCCGACGATCCACAACAACGAGAGCGGCCACGCGCCTCAGTTCCTGGTGGTTGGCGGCATATGGGTACCGGCGGCCGAGTACGCCGCCATGTCCACCACCACTTCCTCGGGAGAAGCAGTCAGCGCCGCTACCACGAACGGAATTTATGCACCGGTGGCAGCAGCGGCAGCGCCGCATCCATTACCCAGCACAGTCCAAAAGCCCAAACCCAAGATCCCTTCCTCCGCAGCCGTCGCCGCCGCCGAATCTAATTCTCCGACTACATCTTCCTCTACTCATACGTCTTCAGTTTCACCAGCTGCCTCTTGA 1113 54.36 MVYSDKMQEIASKMGFTLSDFADTLEQERRKVLMFQRELPLCLQLVSHAIDCCRQQLSETTTENRQSECSEQTSSDMGPVLEEFIPINRNGVSDFEQTEKNKNNDDSDLNNLNLAPSDWLRSAQLWNQTSDPPPLNQDQAENTPVVDVNRNGGAFRPFQKEKTGSAGGGGGASSSSAPAPAAETSSTTETGSGGSSRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPTIHNNESGHAPQFLVVGGIWVPAAEYAAMSTTTSSGEAVSAATTNGIYAPVAAAAAPHPLPSTVQKPKPKIPSSAAVAAAESNSPTTSSSTHTSSVSPAAS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15489952 15492931 + ClG42_08g0065600.10 Clacu08g0656 254998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0656 370 MobiDBLite consensus disorder prediction 126 146 - -
Clacu08g0656 370 MobiDBLite consensus disorder prediction 346 370 - -
Clacu08g0656 370 MobiDBLite consensus disorder prediction 126 212 - -
Clacu08g0656 370 MobiDBLite consensus disorder prediction 327 370 - -
Clacu08g0656 370 MobiDBLite consensus disorder prediction 168 193 - -
Clacu08g0656 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Clacu08g0656 370 NCBIfam myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677(InterPro)
Clacu08g0656 370 MobiDBLite consensus disorder prediction 194 212 - -
Clacu08g0656 370 FunFam Myb family transcription factor 207 265 - -
Clacu08g0656 370 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Clacu08g0656 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 12 342 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0656 370 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Clacu08g0656 370 Gene3D - 207 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0656 Clacu-Chr8:15489952 Clacu11g0408 Clacu-Chr11:3838314 5.80E-42 dispersed
Clacu05g1692 Clacu-Chr5:25580547 Clacu08g0656 Clacu-Chr8:15489952 5.40E-09 transposed
Clacu05g2494 Clacu-Chr5:33037201 Clacu08g0656 Clacu-Chr8:15489952 8.80E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48134 PF00249 Myb_DNA-binding 1.60E-06 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0656 - - - 0.0