Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu08g0656 | ATGGTTTACTCCGACAAAATGCAAGAAATTGCATCCAAAATGGGTTTCACACTCTCCGATTTCGCCGATACTTTGGAACAAGAACGCCGTAAAGTCCTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGCAGCTCGTTTCCCATGCCATTGATTGTTGCAGGCAGCAGTTATCGGAGACGACGACGGAAAATCGTCAATCGGAATGCTCCGAGCAGACTTCCAGTGACATGGGTCCGGTTCTTGAGGAGTTCATTCCGATTAACAGAAATGGGGTTTCTGATTTTGAACAAACGGAGAAAAATAAGAATAACGACGACTCTGATTTAAACAATTTGAATTTGGCTCCGTCTGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACTTCAGATCCTCCTCCCCTGAATCAGGACCAGGCAGAGAACACGCCGGTTGTTGACGTCAACAGAAATGGCGGCGCTTTCCGGCCGTTTCAGAAGGAGAAAACCGGTAGCGCCGGCGGGGGAGGTGGGGCATCCTCGTCTTCAGCTCCGGCTCCGGCTGCGGAAACGAGCTCGACGACGGAGACGGGGTCAGGCGGAAGTAGCCGACGGGAAGAGAAGGAAGCTCAGAATCAGAGGAAACAGAGACGGTGCTGGTCGCCGGAGCTGCACCGGCGGTTCCTTCATGCACTTCAGCAGCTCGGAGGTTCCCATGTGGCGACGCCGAAGCAAATAAGGGAATTGATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATCTACAGAAGTATCGTCTGCACACGAGACGGCCAAGTCCGACGATCCACAACAACGAGAGCGGCCACGCGCCTCAGTTCCTGGTGGTTGGCGGCATATGGGTACCGGCGGCCGAGTACGCCGCCATGTCCACCACCACTTCCTCGGGAGAAGCAGTCAGCGCCGCTACCACGAACGGAATTTATGCACCGGTGGCAGCAGCGGCAGCGCCGCATCCATTACCCAGCACAGTCCAAAAGCCCAAACCCAAGATCCCTTCCTCCGCAGCCGTCGCCGCCGCCGAATCTAATTCTCCGACTACATCTTCCTCTACTCATACGTCTTCAGTTTCACCAGCTGCCTCTTGA | 1113 | 54.36 | MVYSDKMQEIASKMGFTLSDFADTLEQERRKVLMFQRELPLCLQLVSHAIDCCRQQLSETTTENRQSECSEQTSSDMGPVLEEFIPINRNGVSDFEQTEKNKNNDDSDLNNLNLAPSDWLRSAQLWNQTSDPPPLNQDQAENTPVVDVNRNGGAFRPFQKEKTGSAGGGGGASSSSAPAPAAETSSTTETGSGGSSRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPTIHNNESGHAPQFLVVGGIWVPAAEYAAMSTTTSSGEAVSAATTNGIYAPVAAAAAPHPLPSTVQKPKPKIPSSAAVAAAESNSPTTSSSTHTSSVSPAAS | 370 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 15489952 | 15492931 | + | ClG42_08g0065600.10 | Clacu08g0656 | 254998 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu08g0656 | 370 | MobiDBLite | consensus disorder prediction | 126 | 146 | - | - | |
Clacu08g0656 | 370 | MobiDBLite | consensus disorder prediction | 346 | 370 | - | - | |
Clacu08g0656 | 370 | MobiDBLite | consensus disorder prediction | 126 | 212 | - | - | |
Clacu08g0656 | 370 | MobiDBLite | consensus disorder prediction | 327 | 370 | - | - | |
Clacu08g0656 | 370 | MobiDBLite | consensus disorder prediction | 168 | 193 | - | - | |
Clacu08g0656 | 370 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 205 | 265 | IPR017930 | - | |
Clacu08g0656 | 370 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 208 | 263 | IPR006447 | GO:0003677(InterPro) | |
Clacu08g0656 | 370 | MobiDBLite | consensus disorder prediction | 194 | 212 | - | - | |
Clacu08g0656 | 370 | FunFam | Myb family transcription factor | 207 | 265 | - | - | |
Clacu08g0656 | 370 | Pfam | Myb-like DNA-binding domain | 210 | 261 | IPR001005 | - | |
Clacu08g0656 | 370 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 12 | 342 | IPR044787 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu08g0656 | 370 | SUPERFAMILY | Homeodomain-like | 206 | 266 | IPR009057 | - | |
Clacu08g0656 | 370 | Gene3D | - | 207 | 265 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu08g0656 | Clacu-Chr8:15489952 | Clacu11g0408 | Clacu-Chr11:3838314 | 5.80E-42 | dispersed | |
Clacu05g1692 | Clacu-Chr5:25580547 | Clacu08g0656 | Clacu-Chr8:15489952 | 5.40E-09 | transposed | |
Clacu05g2494 | Clacu-Chr5:33037201 | Clacu08g0656 | Clacu-Chr8:15489952 | 8.80E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48134 | PF00249 | Myb_DNA-binding | 1.60E-06 | CL0123 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu08g0656 | - | - | - | 0.0 |