Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0656 ATGGTTTACTCCGACAAAATGCAAGAAATTGCATCCAAAATGGGTTTCACACTCTCCGATTTCGCCGATACTTTGGAACAAGAACGCCGTAAAGTCCTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGCAGCTCGTTTCCCATGCCATTGATTGTTGCAGGCAGCAGTTATCGGAGACGACGACGGAAAATCGTCAATCGGAATGCTCCGAGCAGACTTCCAGTGACATGGGTCCGGTTCTTGAGGAGTTCATTCCGATTAACAGAAATGGGGTTTCTGATTTTGAACAAACGGAGAAAAATAAGAATAACGACGACTCTGATTTAAACAATTTGAATTTGGCTCCGTCTGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACTTCAGATCCTCCTCCCCTGAATCAGGACCAGGCAGAGAACACGCCGGTTGTTGACGTCAACAGAAATGGCGGCGCTTTCCGGCCGTTTCAGAAGGAGAAAACCGGTAGCGCCGGCGGGGGAGGTGGGGCATCCTCGTCTTCAGCTCCGGCTCCGGCTGCGGAAACGAGCTCGACGACGGAGACGGGGTCAGGCGGAAGTAGCCGACGGGAAGAGAAGGAAGCTCAGAATCAGAGGAAACAGAGACGGTGCTGGTCGCCGGAGCTGCACCGGCGGTTCCTTCATGCACTTCAGCAGCTCGGAGGTTCCCATGTGGCGACGCCGAAGCAAATAAGGGAATTGATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATCTACAGAAGTATCGTCTGCACACGAGACGGCCAAGTCCGACGATCCACAACAACGAGAGCGGCCACGCGCCTCAGTTCCTGGTGGTTGGCGGCATATGGGTACCGGCGGCCGAGTACGCCGCCATGTCCACCACCACTTCCTCGGGAGAAGCAGTCAGCGCCGCTACCACGAACGGAATTTATGCACCGGTGGCAGCAGCGGCAGCGCCGCATCCATTACCCAGCACAGTCCAAAAGCCCAAACCCAAGATCCCTTCCTCCGCAGCCGTCGCCGCCGCCGAATCTAATTCTCCGACTACATCTTCCTCTACTCATACGTCTTCAGTTTCACCAGCTGCCTCTTGA 1113 54.36 MVYSDKMQEIASKMGFTLSDFADTLEQERRKVLMFQRELPLCLQLVSHAIDCCRQQLSETTTENRQSECSEQTSSDMGPVLEEFIPINRNGVSDFEQTEKNKNNDDSDLNNLNLAPSDWLRSAQLWNQTSDPPPLNQDQAENTPVVDVNRNGGAFRPFQKEKTGSAGGGGGASSSSAPAPAAETSSTTETGSGGSSRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPTIHNNESGHAPQFLVVGGIWVPAAEYAAMSTTTSSGEAVSAATTNGIYAPVAAAAAPHPLPSTVQKPKPKIPSSAAVAAAESNSPTTSSSTHTSSVSPAAS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15489952 15492931 + ClG42_08g0065600.10 Clacu08g0656 254998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0656 370 MobiDBLite consensus disorder prediction 126 146 - -
Clacu08g0656 370 MobiDBLite consensus disorder prediction 346 370 - -
Clacu08g0656 370 MobiDBLite consensus disorder prediction 126 212 - -
Clacu08g0656 370 MobiDBLite consensus disorder prediction 327 370 - -
Clacu08g0656 370 MobiDBLite consensus disorder prediction 168 193 - -
Clacu08g0656 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Clacu08g0656 370 NCBIfam myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677(InterPro)
Clacu08g0656 370 MobiDBLite consensus disorder prediction 194 212 - -
Clacu08g0656 370 FunFam Myb family transcription factor 207 265 - -
Clacu08g0656 370 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Clacu08g0656 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 12 342 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0656 370 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Clacu08g0656 370 Gene3D - 207 265 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0656 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0656 Clacu-Chr8:15489952 Clacu11g0408 Clacu-Chr11:3838314 5.80E-42 dispersed
Clacu05g1692 Clacu-Chr5:25580547 Clacu08g0656 Clacu-Chr8:15489952 5.40E-09 transposed
Clacu05g2494 Clacu-Chr5:33037201 Clacu08g0656 Clacu-Chr8:15489952 8.80E-72 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g0372 . 12 302 G2-like Transcription Factor Family AT3G24120 63.1 2.5e-88 322.4
Clacu02g1922 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Clacu07g0217 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.7e-40 161.0
Clacu09g2308 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Clacu01g2176 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Clacu05g1216 . 246 446 G2-like Transcription Factor Family AT5G16560 56.5 7.9e-45 178.3
Clacu09g1167 . 199 403 G2-like Transcription Factor Family AT5G16560 51.7 7.0e-41 165.2
Clacu05g2133 . 1 167 G2-like Transcription Factor Family AT5G42630 58.3 7.3e-40 161.0
Clacu08g1709 . 50 136 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Clacu05g2494 . 19 256 G2-like Transcription Factor Family AT1G25550 55.4 5.5e-53 204.9
Clacu08g0656 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 6.0e-52 201.4
Clacu03g0131 . 1 269 G2-like Transcription Factor Family AT3G46640 51.7 3.2e-60 229.2
Clacu04g0629 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.1e-74 275.0
Clacu10g1634 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 6.8e-69 257.7
Clacu05g0372 . 12 302 G2-like Transcription Factor Family AT3G24120 63.1 2.5e-88 322.4
Clacu02g1922 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Clacu07g0217 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.7e-40 161.0
Clacu09g2308 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Clacu01g2176 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Clacu11g1134 . 1 228 G2-like Transcription Factor Family AT1G69580 56.0 1.2e-49 194.1
Clacu09g2308 . 1 379 G2-like Transcription Factor Family AT1G79430 55.0 2.8e-86 315.8
Clacu02g1922 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 7.2e-74 274.6
Clacu01g2175 . 102 344 G2-like Transcription Factor Family AT2G01060 62.3 2.0e-56 216.1
Clacu04g0629 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.2e-91 333.6
Clacu10g1634 . 1 283 G2-like Transcription Factor Family AT3G10760 57.8 5.2e-82 301.6
Clacu04g0629 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.4e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004323 2 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48134 PF00249 Myb_DNA-binding 1.60E-06 CL0123 Clacu TF