Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0697 ATGGTGAAGAAGGAATTAGCAAATGATGACATTCATTCCACAACACTCTCAACAAGTAAAAAGAAATACAAGGGAGTAAGAATGAGAAGCTGGGGTTCATGGGTTTCTGAAATTAGAGCTCCAAATCAAAAGACAAGAATATGGTTAGGTTCATATTCGACGGCGGAGGCCGCCGCCAGAGCTTACGACGCCGCCCTCTTGTGCCTTAAAGGCTCCTCTGCCAATCTAAATTTTCCAATCTCTTCTTCTTCCTTTGCTCATTTTCACAATTTTCTCTCTTCAAATCATGATGATAATAATGTTATGTCTCCAAAGTCCATCCAAAGAGTTGCGGCCGAAGCTGCAGCTAACACCGCCTTTTTTGATGGCAATGTCGACAATAATACGACGGGATCTAACGATGTTCTGCCATCGTCGCCACTGCCTTCCTCCTCCTCCTCTTCTTCTTCTTCCTCTGTCTCGTCGACGTCGAATAATGATTCGTTTATGATGATGGAGCCGTCGTGGTTCAACTTTGATGACATACTCTCCCCTAAGTACGTTGGGCAAATGATGGATGGAACTCTTTTTGATCCACCCATTATTGATGATTTTTATGAAGAAAGTGATATTCGTTTATGGAGCTTCTGTTGA 633 42.81 MVKKELANDDIHSTTLSTSKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPISSSSFAHFHNFLSSNHDDNNVMSPKSIQRVAAEAAANTAFFDGNVDNNTTGSNDVLPSSPLPSSSSSSSSSSVSSTSNNDSFMMMEPSWFNFDDILSPKYVGQMMDGTLFDPPIIDDFYEESDIRLWSFC 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16669373 16670005 - ClG42_08g0069700.10 Clacu08g0697 255039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0697 210 MobiDBLite consensus disorder prediction 131 158 - -
Clacu08g0697 210 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0697 210 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0697 210 CDD AP2 21 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0697 210 Pfam AP2 domain 22 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0697 210 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677(InterPro)
Clacu08g0697 210 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0697 210 SMART rav1_2 22 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0697 210 FunFam ethylene-responsive transcription factor ERF014-like 21 81 - -
Clacu08g0697 210 Gene3D AP2/ERF domain 21 81 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0697 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 160 IPR051032 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1532 Clacu-Chr3:28933769 Clacu08g0697 Clacu-Chr8:16669373 3.10E-21 dispersed
Clacu08g0697 Clacu-Chr8:16669373 Clacu08g1130 Clacu-Chr8:21294238 2.10E-17 dispersed
Clacu11g1746 Clacu-Chr11:28642096 Clacu08g0697 Clacu-Chr8:16669373 1.00E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48139 PF00847 AP2 4.00E-12 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0697 - - - 0.0