Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0702 ATGGGCATATATGTAATATGCATGGCCACTCTCACAAAAGGCATGAGTCGTTATGTTTTGATCGTGTATCGAAACACTATTGCTGCTCTCTTTCTCGCTCCGTTCGCACTAATCTTTGAAAGGAAAACAAGACCAAAGATGACACTCCCTGTCGCTTTACAAATCATGGTCTTAGGTTTTCTAGAACCAGTTGTGGATCAAGGGTTTGGTTATCTAGGAATGATGTACACGTCAGCATCATTTGCATCGGCCATCATGAATGCTGTGCCTTCTGTTACCTTTATCATTGCAGTCATTTTTCGGGTGGAGCATTTAAATATAAAACAAGTACGAGGGGTAGCCAAAGTAATTGGCACTTTAGTGACCTTTGCTGGAGCTTTGGTTATGACACTTTACAAAGGCCCAATTCTTGAATTCTTTTGGACACAAAAAACCAACCACCATGTTAACAGCGGCGCCGCCGCAGCCAATCAGCACTGGGTGGCCGGAACTTTGTTCATCCTTCTGGGCTGCGTGTCTTGGTCTTGTTTCTACATATTACAATCTATAACAGTGAAGAGATACCCAGCGGAGCTGTCTCTGTCGGCATTGATATGCTTGGCCGGTGCACTTCAAAGCACAGTGATAGCAGTAGCTATAGAGCATCGTCCTAGCGCATGGGCTGTGGGTTGGGACTCTAGGCTTCTAGCTCCTCTCTATACGGGAATAGTTGGATCAGGAATTGCATATTACTTTCAAGCTATAGTTATGAAGACAAGAGGTCCTGTATTTGTGACGGCTTTCAACCCTTTATGTATGATTGTCGTCACTATTATCTCCTCTATTGTTCTCGCCGAGAAGATTCATCTTGGAAGCGTGATTGGAGCCATTATCATCGCACTTGGGCTTTATTCAGTCGTTTGGGGGAAAAGCAAGGATTATTCCACTGCCGGCAACCCCCAAAAGCCTAACGCCGCCGTGTCGGAGCTTCCAATTACTGCCTCTCAACCCCCAACCGAACAAGATGTTCATCTTCAACCTCCAAAATGA 1029 45.09 MGIYVICMATLTKGMSRYVLIVYRNTIAALFLAPFALIFERKTRPKMTLPVALQIMVLGFLEPVVDQGFGYLGMMYTSASFASAIMNAVPSVTFIIAVIFRVEHLNIKQVRGVAKVIGTLVTFAGALVMTLYKGPILEFFWTQKTNHHVNSGAAAANQHWVAGTLFILLGCVSWSCFYILQSITVKRYPAELSLSALICLAGALQSTVIAVAIEHRPSAWAVGWDSRLLAPLYTGIVGSGIAYYFQAIVMKTRGPVFVTAFNPLCMIVVTIISSIVLAEKIHLGSVIGAIIIALGLYSVVWGKSKDYSTAGNPQKPNAAVSELPITASQPPTEQDVHLQPPK 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16778760 16785417 + ClG42_08g0070200.10 Clacu08g0702 255044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0702 342 SUPERFAMILY Multidrug resistance efflux transporter EmrE 23 132 - -
Clacu08g0702 342 PANTHER WAT1-RELATED PROTEIN 1 312 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Clacu08g0702 342 Pfam EamA-like transporter family 2 118 IPR000620 GO:0016020(InterPro)
Clacu08g0702 342 Pfam EamA-like transporter family 163 300 IPR000620 GO:0016020(InterPro)
Clacu08g0702 342 SUPERFAMILY Multidrug resistance efflux transporter EmrE 220 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0702 Clacu-Chr8:16778760 Clacu10g1627 Clacu-Chr10:29624319 2.40E-87 dispersed
Clacu11g1749 Clacu-Chr11:28669297 Clacu08g0702 Clacu-Chr8:16778760 2.70E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0702 - - - 0.0