Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu08g0725 | ATGGAATTGAAAACAGAAGTAAAGGAAGTTCAACACCATTTCCATGTACTGGCAGTGGATGATAGTCTTATTGATAGAAAGCTTTTGGAAAAGCTATTAACAATTTCTTCATGTGAAGTTACCTGTGTGGAATCTGGAGATAAAGCTCTTAGATATTTGGGTCTTCTTGATGATCTCGATAAATTCTCTTCTTCTGCTGCTGCTGCTTCTTTTTCTTCCTCACAACTCTCCCAACAACAGGAAGTCAAAGTCAACCTAATCATGACAGATTATTGTATGCCTGGGATGAGTGGTTATGATCTACTCAAACGACTCAAGGGATCTTATTGGAAGGATATTCCTGTTGTTGTGATGTCATCAGAGAACGAACCTTCAAGAATCAACATGTGTTTGGAAGAAGGAGCAGAGGAATTCCTTCTAAAACCTCTTCAACTATCAGATGTCAAGAAGCTCGAGCCTCACCTTCAAAAATCCCTCACCCGTTGTTCTACAGATCAAATCAATGAAGAAGAAATTACCACAGTCGGAATCGGAATCACCGACGAACAGAACTTGAAATTAGAAGAGAGTAAGAAGAATGAGAATAGCATTAATAATAGCTTGAGCAAGAGAAAGGCAGCGAATCCAGAGCATTGTGAAGAAAGACGACCAAAATTGAAAGAATTGGAAGCTGGAGTATGA | 681 | 39.06 | MELKTEVKEVQHHFHVLAVDDSLIDRKLLEKLLTISSCEVTCVESGDKALRYLGLLDDLDKFSSSAAAASFSSSQLSQQQEVKVNLIMTDYCMPGMSGYDLLKRLKGSYWKDIPVVVMSSENEPSRINMCLEEGAEEFLLKPLQLSDVKKLEPHLQKSLTRCSTDQINEEEITTVGIGITDEQNLKLEESKKNENSINNSLSKRKAANPEHCEERRPKLKELEAGV | 226 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 17094516 | 17098528 | + | ClG42_08g0072500.10 | Clacu08g0725 | 255067 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu08g0725 | 226 | CDD | REC_typeA_ARR | 16 | 151 | - | - | |
Clacu08g0725 | 226 | Gene3D | - | 15 | 224 | - | - | |
Clacu08g0725 | 226 | SMART | REC_2 | 14 | 152 | IPR001789 | GO:0000160(InterPro) | |
Clacu08g0725 | 226 | ProSiteProfiles | Response regulatory domain profile. | 15 | 156 | IPR001789 | GO:0000160(InterPro) | |
Clacu08g0725 | 226 | MobiDBLite | consensus disorder prediction | 206 | 226 | - | - | |
Clacu08g0725 | 226 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 11 | 205 | IPR045279 | GO:0009736(InterPro) | |
Clacu08g0725 | 226 | SUPERFAMILY | CheY-like | 14 | 150 | IPR011006 | - | |
Clacu08g0725 | 226 | MobiDBLite | consensus disorder prediction | 189 | 226 | - | - | |
Clacu08g0725 | 226 | Pfam | Response regulator receiver domain | 66 | 149 | IPR001789 | GO:0000160(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu08g0725 | Clacu-Chr8:17094516 | Clacu10g1595 | Clacu-Chr10:29270778 | 1.60E-39 | dispersed | |
Clacu08g0725 | Clacu-Chr8:17094516 | Clacu06g1772 | Clacu-Chr6:28263442 | 4.20E-35 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48142 | PF00072 | Response_reg | 1.70E-15 | CL0304 | Clacu | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu08g0725 | K14492 | - | csv:101216267 | 326.635 |