Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0725 ATGGAATTGAAAACAGAAGTAAAGGAAGTTCAACACCATTTCCATGTACTGGCAGTGGATGATAGTCTTATTGATAGAAAGCTTTTGGAAAAGCTATTAACAATTTCTTCATGTGAAGTTACCTGTGTGGAATCTGGAGATAAAGCTCTTAGATATTTGGGTCTTCTTGATGATCTCGATAAATTCTCTTCTTCTGCTGCTGCTGCTTCTTTTTCTTCCTCACAACTCTCCCAACAACAGGAAGTCAAAGTCAACCTAATCATGACAGATTATTGTATGCCTGGGATGAGTGGTTATGATCTACTCAAACGACTCAAGGGATCTTATTGGAAGGATATTCCTGTTGTTGTGATGTCATCAGAGAACGAACCTTCAAGAATCAACATGTGTTTGGAAGAAGGAGCAGAGGAATTCCTTCTAAAACCTCTTCAACTATCAGATGTCAAGAAGCTCGAGCCTCACCTTCAAAAATCCCTCACCCGTTGTTCTACAGATCAAATCAATGAAGAAGAAATTACCACAGTCGGAATCGGAATCACCGACGAACAGAACTTGAAATTAGAAGAGAGTAAGAAGAATGAGAATAGCATTAATAATAGCTTGAGCAAGAGAAAGGCAGCGAATCCAGAGCATTGTGAAGAAAGACGACCAAAATTGAAAGAATTGGAAGCTGGAGTATGA 681 39.06 MELKTEVKEVQHHFHVLAVDDSLIDRKLLEKLLTISSCEVTCVESGDKALRYLGLLDDLDKFSSSAAAASFSSSQLSQQQEVKVNLIMTDYCMPGMSGYDLLKRLKGSYWKDIPVVVMSSENEPSRINMCLEEGAEEFLLKPLQLSDVKKLEPHLQKSLTRCSTDQINEEEITTVGIGITDEQNLKLEESKKNENSINNSLSKRKAANPEHCEERRPKLKELEAGV 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17094516 17098528 + ClG42_08g0072500.10 Clacu08g0725 255067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0725 226 CDD REC_typeA_ARR 16 151 - -
Clacu08g0725 226 Gene3D - 15 224 - -
Clacu08g0725 226 SMART REC_2 14 152 IPR001789 GO:0000160(InterPro)
Clacu08g0725 226 ProSiteProfiles Response regulatory domain profile. 15 156 IPR001789 GO:0000160(InterPro)
Clacu08g0725 226 MobiDBLite consensus disorder prediction 206 226 - -
Clacu08g0725 226 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 205 IPR045279 GO:0009736(InterPro)
Clacu08g0725 226 SUPERFAMILY CheY-like 14 150 IPR011006 -
Clacu08g0725 226 MobiDBLite consensus disorder prediction 189 226 - -
Clacu08g0725 226 Pfam Response regulator receiver domain 66 149 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0725 Clacu-Chr8:17094516 Clacu10g1595 Clacu-Chr10:29270778 1.60E-39 dispersed
Clacu08g0725 Clacu-Chr8:17094516 Clacu06g1772 Clacu-Chr6:28263442 4.20E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48142 PF00072 Response_reg 1.70E-15 CL0304 Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0725 K14492 - csv:101216267 326.635