Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0739 ATGGGAAGTCTGCAGAAGGAAGCACAAATGAGTACGGTGGCGACACCGTCCTTTGGTGGTGGCAACAACCGGATAGCGGCAGTTAACACGGTGGAGAGAACAACTCCGGCCAACGCCGTCAAGCCACAGACCACCACCCATCAGAAACCTGGATGGAGAAAGTTTCTATCACACGTTGGCCCTGGCTTCCTCGTCTCATTGGCTTATCTTGATCCTGGCAATTTGGAAACGGACTTGCAAGCTGGAGCTAATCACGGATTCGAGCTTCTATGGGTGGTGCTTATCGGATTAATATTTGCGCTCATAATCCAATCCCTTGCTGCAAATCTTGGCGTAAGCACCGGAAAACACCTTTCGGAAGTATGCAAAGCCGAATATCCCATATTTGTGAAGTATTGCCTTTGGTTGCTGGCTGAAGTTGCTGTAATAGCCGCCGATATTCCCGAAGTGATAGGAACAGCCTTTGCTTTGAATATTCTATTCCATATTCCTGTTTGGGCTGGAGTTCTTCTCACCGGCTTAAGTACCCTATTGCTCCTTGGACTCCAAAGATATGGGGCTCGGAAGCTGGAATTGCTGATAGCAATATTGGTGTTCATAATGGCGGCGTGTTTCTTCGGGGAAATGAGCTACGTGAAGCCGCCGGCGAGCGGAGTTTTAAAAGGAATGTTTGTTCCAAAGCTGAAGGGGGAAGGAGCCACCGGCGACGCCATTGCTCTTCTGGGGGCCCTCGTTATGCCGCATAACCTGTTTCTTCATTCTGCTCTGGTGCTATCAAGGAAAGTCCCCAATTCCGTCCGCGGTGTCAACGACGCGTGTAGGTACTTCCTAATAGAGAGCGGATTTGCATTGTTCATAGCATTTTTAATAAACGTGGCCGTGGTTTCAGTTTCCGGCACCGTTTGTACGGTGGGAAAAGTCTCCGAAACCACTGCTAATCAGTGCTCCGACATAACTCTCAACTCCGCCTCCTTCCTCCTCCAGAACGTTTTGGGAAAATCAAGCTCCATTATTTACGCCATTGCGTTGTTTGCCTCCGGACAAAGCTCCAGCATCACCGGCACTTATGCCGGTCAGTTCATCATGCAGGGATTTTTGGACCTGAAAATGAAAACATGGGCGAGAAACCTTATGACAAGGTCCATTGCAATAACCCCTAGTCTCATTGTATCCATCATCGGTGGACCTCAAGGAGCTGGCCGTCTCATCATTATTGCATCGATGATTCTCTCCTTCGAGCTTCCATTTGCTCTAATTCCACTCCTCAAATTCAGTAGCAGCACCACCAAGATGGGCCCCCACAAGAATTCCATATACATCATTGTAATCTCGTGGATATTGGGCCTGGGAATCATCGGTATCAACATCTATTATCTCAGTACGGGCTTCGTGGGCTGGCTAATCCACAACAATTTACACAAAGTTGCAAATGTTTTCATTGGGATCGTTGTGTTTCCGTTAATGGCCACGTATATTCTTGCCGTTATTTACTTAACGTTTCGCAAAGACAGGGTCGTGACTTACATTGAGCCCGAAAAGGATGATCCTATGGGCCAAGCTCATTTGGAAAGTGGGCTGAACAATGCTTTTGGGCCGCGTGACGTCACCCCTGTGCCTTTTAGAGAGGATTTGGCCCATATCCCACTACCAGAGTAG 1656 48.31 MGSLQKEAQMSTVATPSFGGGNNRIAAVNTVERTTPANAVKPQTTTHQKPGWRKFLSHVGPGFLVSLAYLDPGNLETDLQAGANHGFELLWVVLIGLIFALIIQSLAANLGVSTGKHLSEVCKAEYPIFVKYCLWLLAEVAVIAADIPEVIGTAFALNILFHIPVWAGVLLTGLSTLLLLGLQRYGARKLELLIAILVFIMAACFFGEMSYVKPPASGVLKGMFVPKLKGEGATGDAIALLGALVMPHNLFLHSALVLSRKVPNSVRGVNDACRYFLIESGFALFIAFLINVAVVSVSGTVCTVGKVSETTANQCSDITLNSASFLLQNVLGKSSSIIYAIALFASGQSSSITGTYAGQFIMQGFLDLKMKTWARNLMTRSIAITPSLIVSIIGGPQGAGRLIIIASMILSFELPFALIPLLKFSSSTTKMGPHKNSIYIIVISWILGLGIIGINIYYLSTGFVGWLIHNNLHKVANVFIGIVVFPLMATYILAVIYLTFRKDRVVTYIEPEKDDPMGQAHLESGLNNAFGPRDVTPVPFREDLAHIPLPE 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17245945 17253419 - ClG42_08g0073900.10 Clacu08g0739 255081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0739 551 PRINTS Natural resistance-associated macrophage protein signature 237 260 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Clacu08g0739 551 PRINTS Natural resistance-associated macrophage protein signature 347 366 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Clacu08g0739 551 PRINTS Natural resistance-associated macrophage protein signature 407 426 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Clacu08g0739 551 PRINTS Natural resistance-associated macrophage protein signature 134 160 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Clacu08g0739 551 PRINTS Natural resistance-associated macrophage protein signature 375 392 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Clacu08g0739 551 PRINTS Natural resistance-associated macrophage protein signature 187 208 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Clacu08g0739 551 PRINTS Natural resistance-associated macrophage protein signature 162 181 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Clacu08g0739 551 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 44 510 IPR001046 GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Clacu08g0739 551 Pfam Natural resistance-associated macrophage protein-like 76 437 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Clacu08g0739 551 Hamap Divalent metal cation transporter MntH [mntH]. 42 463 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Clacu08g0739 551 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 53 429 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Clacu08g0739 551 NCBIfam Nramp family divalent metal transporter 60 426 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0739 Clacu-Chr8:17245945 Clacu10g1290 Clacu-Chr10:25843528 6.60E-167 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0739 K21398 - csv:101219356 939.102