Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0740 ATGTCTGCCCATAATCGCCGCCCTTCGTTTTCGTCGTCGACATCCTCCTCGTTGGCCAAACGACAAGCGTCCTCGGCCTCGTCGTCAGACAATGTCGGAAAAGTTATGGCAGTTCCGCCACATTTGGCGAAGAAGCGAGCACCACTCGGTAACCTAACGAATTTTAAGAATGTGTCTCATAGCGCAGCCAAAAGCTCTGTTCCTCCTGCTATTATGGTGCCTTGTGCAACCAAAGCTGTCAAGGCTAGAAAGAGTTCCCCTGCTAGAACTCGCAGCACTAACTTGACGACGACTAATACAACCACATTGCTCGATGTCAAAACTACGAATGCAATTGCTCCTAGCAATGTTACAGCTTTCTCAAGAACTGATGCAACCGCTGTCTCTAGTTCTATGGATGTCTCTCCCTCTAAATCAGATGGAGTTTCAGTTTCCTTAGATGAAACTATGTCTACTTGCGATTCGTTTAAGAGTCCGGACGTCGAGTACTTGGACAATACTGATGTCCCAGCAGTTGATTCTGTTGAGAGGAAAACTAAAAGCAGTCTCTGCATTTCAGGTCCTGCACCAATTAGTAGTCAGGCACCAGTTAAAGGTAGTATATGCAATAGAGATGTAATTACAGAAATGGAAACAGATGGCGACATCGTTGATGTTGACACGGATTTCATGGATCCGCAGCAATGTGCTACAATTGCTTGTGACATTTACAAGCACTTACGAGCATCTGAGGCAAAGAAAAGGCCTTCAACAGATTTCATGGAGAAAATTCAGAAGGATATAAATTCAAATATGCGTGCCATACTGATCGATTGGCTTGTGGAGGTAGCAGAAGAGTATAGGCTTGTCCCAGATACTCTATATTTGACAGTAAACTACATTGATCGATACCTATCTGGAAATTCGATGGATCGACAACGATTACAATTGCTTGGTGTTGCTTGCATGATGATTGCCTCAAAATATGAAGAGATCTGTGCGCCTCAAGTGGAAGAATTTTGTTACATAACTGATAACACATATTTTAAAGACGAGGTATTGGAAATGGAATCTTCTGTCTTGAATTACTTGAAGTTCGAAATGACGGCCCCTACACCTAAATGTTTCTTAAGGCGATTTGTTCGTGCTGCTCAAGGCGCCACCGATGAGGTTTCATCAATGCAGTTGGAATGCTTGGCCAACTTCCTTGCTGAATTATCTCTTATAGAATACAGTATGCTCTGCTACGCACCATCGCTCGTAGCTGCCTCGGCGATCTTCTTGGCGAAGTTCATACTTCTTCCAACTAAGAGACCATGGAACTCCACCTTGCAACATTATACTCATTATCAGCCATCCGACCTTGTCGACTGCGTTAAGGATTTGCATCGCCTCTGCTGCAACACCCACAATTCTAGCTTACCAGCCATCAGAGAGAAATACAGCCAGCATAAGTACAAGCACGTGGCCAAGAAGTACTGCCCTCCGACGATACCGCCGGAGTTCTTCCAGAATCAAACACAGTAA 1506 44.49 MSAHNRRPSFSSSTSSSLAKRQASSASSSDNVGKVMAVPPHLAKKRAPLGNLTNFKNVSHSAAKSSVPPAIMVPCATKAVKARKSSPARTRSTNLTTTNTTTLLDVKTTNAIAPSNVTAFSRTDATAVSSSMDVSPSKSDGVSVSLDETMSTCDSFKSPDVEYLDNTDVPAVDSVERKTKSSLCISGPAPISSQAPVKGSICNRDVITEMETDGDIVDVDTDFMDPQQCATIACDIYKHLRASEAKKRPSTDFMEKIQKDINSNMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKDEVLEMESSVLNYLKFEMTAPTPKCFLRRFVRAAQGATDEVSSMQLECLANFLAELSLIEYSMLCYAPSLVAASAIFLAKFILLPTKRPWNSTLQHYTHYQPSDLVDCVKDLHRLCCNTHNSSLPAIREKYSQHKYKHVAKKYCPPTIPPEFFQNQTQ 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17279867 17282922 + ClG42_08g0074000.10 Clacu08g0740 255082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0740 501 Gene3D - 249 362 - -
Clacu08g0740 501 SMART cyclin_7 271 355 IPR013763 -
Clacu08g0740 501 SMART cyclin_7 368 457 IPR013763 -
Clacu08g0740 501 Pfam Cyclin, N-terminal domain 235 362 IPR006671 -
Clacu08g0740 501 ProSitePatterns Cyclins signature. 266 297 IPR048258 -
Clacu08g0740 501 Gene3D - 235 484 - -
Clacu08g0740 501 MobiDBLite consensus disorder prediction 1 34 - -
Clacu08g0740 501 CDD CYCLIN_AtCycA-like_rpt2 364 479 - -
Clacu08g0740 501 SUPERFAMILY Cyclin-like 225 361 IPR036915 -
Clacu08g0740 501 CDD CYCLIN_AtCycA_like_rpt1 225 360 - -
Clacu08g0740 501 PANTHER CYCLINS 215 476 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Clacu08g0740 501 FunFam Mitotic cyclin 6 249 349 - -
Clacu08g0740 501 FunFam Cyclin A1 351 484 - -
Clacu08g0740 501 Pfam Cyclin, C-terminal domain 364 485 IPR004367 -
Clacu08g0740 501 MobiDBLite consensus disorder prediction 1 32 - -
Clacu08g0740 501 SUPERFAMILY Cyclin-like 364 491 IPR036915 -
Clacu08g0740 501 PIRSF Cyclin_A_B_D_E 4 494 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Clacu08g0740 501 SMART Cyclin_C_2 364 488 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2234 Clacu-Chr5:30812053 Clacu08g0740 Clacu-Chr8:17279867 1.10E-82 dispersed
Clacu07g0560 Clacu-Chr7:7605250 Clacu08g0740 Clacu-Chr8:17279867 1.50E-15 dispersed
Clacu08g0740 Clacu-Chr8:17279867 Clacu08g1785 Clacu-Chr8:27240746 4.00E-78 dispersed
Clacu08g0740 Clacu-Chr8:17279867 Clacu09g0236 Clacu-Chr9:2184445 3.10E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0740 K06627 - csv:101221569 905.205