Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0767 ATGAAGTCCTTAAATCCATCAAACAGCAACTTCAATTCCATTCCATCTCCAACCCCATTAGAAACTTTCATCCAAGACATGGGGCGTTCAATGGAGACGCTTATTCTACTCACCGTGGTGAAAATAGCCATCATATCAAGCGTTTTTGTCATGGCGGCGACAGCGGCGGTAGCTTCTCAAGCCTTACCCGAGTGCGATGAATGGTGTGGTGACGTGCAAATTCCATATCCATTCGGGACGAGGGAAGGGTGTTATCTGAATGAAACATTCTTCATTGAGTGTAACACAACTCATTACGATTCTCCAAAGGCATTTCTAACGGGCGGCAACGTTAATGTTACAAATATATCAATCTCGGGGGAGCTCCAAATCTTGAACTTAATGGCCCAAGATTGCTACCCGCCAAAAATTGGTGCTGATGTTTTTTCCTCCATCTTTCTCCATATACCTGGGTACACTATTTCCAGTACTAAAAACAAGTTCATTGCTATCGGCTGCGATACTCTCGGTTTTATTTCCGGCCAAAGCAAAGAAGACCAGTCCTTCACAACTGCATGTGTGGCATTGTGTGATGACATTAGCTCGGTTAAAGATGGGGCATGCTCTGGCAATGGGTGTTGTCAGTTGGAGATTCCCAGTGGCCTTAATTATTTGGAAATTCAGGTTAGCAGCTTAAGCAATCACACTAATGTGTCGAGTTTCAATCCTTGTGGTTATGCGTTTGTAATTGAACAACACAACTTCAACTTCTCCTCCAACTATATACGCAATTTTCCTCAAAACAGAATTTCGGCAGTGCTTGATTGGGCCATTACTAACACTACATGCGTAACGGCTAAGAACAAAACTAATTGTATATGTGGCCCAAATAGCACAAAGGTTGACTTGCTCGATGATAAATCTCAATATCTTTGCCGGTGCTTGGAAGGCTTTGAGGGGAATCCATATCTTCCTCAAGGTTGTCAAGATATAGATGAGTGCAAGGATGAAAGTCTTAATGAGTGCAAGTATGAGTGTGTTAATACAATAGGAAACTATACTTGCAATTGTCCAAAGGACTTTAAAGGAGATGGAAGACGTGGAGGAGAAGGTTGCACCCGAAACGCCAAGTCTTTTGTTCAAATCATTGTCGGAGTTACTGTGGGATTCACAGGTTTAGTAATTGGGAGTACATGGTTATACTTGGGTTACAGAAAGTGGAAGTTCATTAAACTGAAGGAGAAATTTTTTGAGAACAATGGTGGTTTGATGCTTCAAAAGCATCTTTCTCAATGGCAATCATCCACTGACATGGTTAGAATTTTCACTCAAGAGGAGCTGGACAAGGCTACAAACAAGTACAACGAAAGTGCAGTGGTTGGAAAAGGTGGCTACGGTACTGTTTACAAAGGAGTTTTAGACGACGGTTCGGTAGTTGCAATCAAGAAATCAAAATTGGTGGACCAATCCCAAACATCTCAATTCATTAACGAAGTCATTGTTCTGTCCCAAATCAACCACCGTAACGTGGTCAAGCTCTTAGGATGTTGTTTGGAGACACAAGTTCCATTGTTGGTGTACGAGTTCATCACCAATGGCACACTTTACGACCACGTCCATGGAAAAGCCAACCAAGATTCTCTTCCATGGGAAGCTCGTTTGAGAATAGCTTCAGAAACTGCAGGGGTGATTGCATATTTGCATTCTTCAGCTTCCACTCCCATTATTCATAGGGATATCAAGACAACCAACATACTTTTAGACCATAATTGTACTGCAAAGGTCTCTGATTTTGGTGCTTCCAAGTTGGTTCCCATAGATCAATCTCAGTTATCCACGATGGTGCTAGGAACTCTTGGATATTTAGACCCTGAATACTTGTTAACCAGCGAGTTGACAGAGAAGAGCGATGTGTATAGCTTTGGAATAGTGCTTCTAGAGCTTATAACAGGGAAGAAGGCAGTGAGTTTCGAGGGGCCAGAAGCGGAGAGGAACCTAGCCATGTATGTCCTATGTGCAATGAAGGAAGATCGTGTGGTAGAAGTTGTGGAAAAGGGAATGGCGACGGAAGCCAACATTGGGCAGATAAAAGAAGCGGCAAAGTTAGCAACAAAGTGTTTGAGAATAAGGGGGGAGGAACGGCCTAGCATGAAGGAGGTGGCCATGGAGTTGGAGGGGCTGAGAGTGTTGATTCAGGCTAATGAGAAATTAGAGAGCACAAGAGAGGAGATGATGGGTTATTTGGTGCAATCAGATGGAGGTTCAGAATCATCATCCAACCAACTTACTGCGAGTGGGAGCACAAATGCTGTGGATGATAGTATGAAGGTTCACATTTTGCCATTGATCCATAATGGAAGATGA 2343 42.98 MKSLNPSNSNFNSIPSPTPLETFIQDMGRSMETLILLTVVKIAIISSVFVMAATAAVASQALPECDEWCGDVQIPYPFGTREGCYLNETFFIECNTTHYDSPKAFLTGGNVNVTNISISGELQILNLMAQDCYPPKIGADVFSSIFLHIPGYTISSTKNKFIAIGCDTLGFISGQSKEDQSFTTACVALCDDISSVKDGACSGNGCCQLEIPSGLNYLEIQVSSLSNHTNVSSFNPCGYAFVIEQHNFNFSSNYIRNFPQNRISAVLDWAITNTTCVTAKNKTNCICGPNSTKVDLLDDKSQYLCRCLEGFEGNPYLPQGCQDIDECKDESLNECKYECVNTIGNYTCNCPKDFKGDGRRGGEGCTRNAKSFVQIIVGVTVGFTGLVIGSTWLYLGYRKWKFIKLKEKFFENNGGLMLQKHLSQWQSSTDMVRIFTQEELDKATNKYNESAVVGKGGYGTVYKGVLDDGSVVAIKKSKLVDQSQTSQFINEVIVLSQINHRNVVKLLGCCLETQVPLLVYEFITNGTLYDHVHGKANQDSLPWEARLRIASETAGVIAYLHSSASTPIIHRDIKTTNILLDHNCTAKVSDFGASKLVPIDQSQLSTMVLGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFEGPEAERNLAMYVLCAMKEDRVVEVVEKGMATEANIGQIKEAAKLATKCLRIRGEERPSMKEVAMELEGLRVLIQANEKLESTREEMMGYLVQSDGGSESSSNQLTASGSTNAVDDSMKVHILPLIHNGR 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17687025 17690521 + ClG42_08g0076700.10 Clacu08g0767 255109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0767 780 SUPERFAMILY EGF/Laminin 322 358 - -
Clacu08g0767 780 ProSiteProfiles EGF-like domain profile. 323 357 IPR000742 -
Clacu08g0767 780 ProSiteProfiles Protein kinase domain profile. 447 724 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0767 780 SMART egfca_6 323 366 IPR001881 GO:0005509(InterPro)
Clacu08g0767 780 CDD EGF_CA 323 357 - -
Clacu08g0767 780 CDD STKc_IRAK 453 720 - -
Clacu08g0767 780 SMART egf_5 326 366 IPR000742 -
Clacu08g0767 780 SMART egf_5 275 322 IPR000742 -
Clacu08g0767 780 FunFam Wall-associated receptor kinase 2 523 739 - -
Clacu08g0767 780 FunFam Wall-associated receptor kinase 2 417 522 - -
Clacu08g0767 780 Gene3D Transferase(Phosphotransferase) domain 1 523 741 - -
Clacu08g0767 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 568 580 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g0767 780 ProSitePatterns Calcium-binding EGF-like domain signature. 323 348 IPR018097 GO:0005509(InterPro)
Clacu08g0767 780 FunFam Fibrillin 2 318 361 - -
Clacu08g0767 780 Gene3D Plasmodium vivax P25 domain 262 371 - -
Clacu08g0767 780 Pfam Wall-associated receptor kinase galacturonan-binding 65 120 IPR025287 GO:0030247(InterPro)
Clacu08g0767 780 Pfam Protein kinase domain 447 713 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0767 780 ProSitePatterns Protein kinases ATP-binding region signature. 453 476 IPR017441 GO:0005524(InterPro)
Clacu08g0767 780 SUPERFAMILY Protein kinase-like (PK-like) 425 718 IPR011009 -
Clacu08g0767 780 Gene3D Phosphorylase Kinase; domain 1 418 522 - -
Clacu08g0767 780 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 339 350 IPR000152 -
Clacu08g0767 780 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 61 733 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Clacu08g0767 780 SMART serkin_6 447 724 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1096 Clacu-Chr3:20340308 Clacu08g0767 Clacu-Chr8:17687025 5.40E-88 dispersed
Clacu06g0231 Clacu-Chr6:2673740 Clacu08g0767 Clacu-Chr8:17687025 4.00E-35 dispersed
Clacu08g0767 Clacu-Chr8:17687025 Clacu08g0769 Clacu-Chr8:17713962 1.40E-218 dispersed
Clacu11g1107 Clacu-Chr11:14132969 Clacu08g0767 Clacu-Chr8:17687025 2.00E-63 dispersed
Clacu08g0765 Clacu-Chr8:17646357 Clacu08g0767 Clacu-Chr8:17687025 1.30E-269 proximal
Clacu08g0767 Clacu-Chr8:17687025 Clacu08g0768 Clacu-Chr8:17706675 3.20E-260 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73743 PF00069 Pkinase 4.50E-48 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0767 - - - 0.0