Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0769 ATGAAGGTAGGCATGGGACGTCCAATAGATAACCTTGTTCTACTCATGATGTTGTTGTTTTCAGCGGCGGCGTCACCGGACTGTGACCAACGACGGTGTGGGAACTTGGAAATTCCATTTCCATTCGGAACGAGAAAAGGGTGTTATCTGAGTGAGAATTTCTTGATCACCTGCAACAAAACTCATAAACCTCCAAGAGCATTTATAGGGGATGGCAACGTTATTGTAACCAATATATCAATCAACGACAGCGAGCTCCGCATCTTGGGTTTGAACAAGTTCGTTGCCATTGGCTGCGATACTCAAGCTTTTATTTCTGGGAAAATCGAGGGGGATGCCTATAAAGGTGGTTGCATGGCGTTGTGTGGAAACAGTAATAAAACTCTAACAGATGGGCACTGCGCTGGGAATCGGTGCTGTGAGTTGGAGATTCCCAAAGGCCTAAAATATTTGGAGATCGTGGTCAGAAGCTTCCACCAGCACAATGAGGTATTCGACTTCAATCCATGTGGGTATGCTTTTGTGATCCAACAAAACAACTTCACTCTCTCCTCCAAATATATTCACATGTTTACACATGTAAGAGTTCCCCTGATGCTTGATTGGGGCATCCCAAACGGTTGTCAAGATGCAAATGAATGCAAGGATACAAGGTTGAATGATTGTGAACATAAACAGATGTGTGTTAACACACAAGGAAATTTTACCTGCTCTTGTCCTAAGAACTATAAAGGAGATGGAAGAAACAAGGGAAAAGGATGCATTCCAACCTATAAGGCCTTCGATCAATACGTCATCGGATGTACTGTAGGGTTAACACTTTTAGTAATTGGGTGCACATTGTTATGCTTGGGTTACGCAAAGTGGAAGGCCATCCACCAAAAGAAATATTTTTTCAAGAAAAATGGAGGTTTGGTGCTTGAACAACATCTTTCCGAGTGGGAATCACCGGTGGAGATGTTCAGAATTTTCACCCATGAAGAGTTGAAGAAGGCTACAAACAAGTTCCATGATAGCGCAGTGGTGGGAAAAGGTGGCTTTGGCACCGTTTACAAAGGCGTCTTAGATGATGGCTTGATAATTGCAATCAAGAAATCGAAATTAGTAGACCAATCCCAAACGGACCAATTCATTAATGAAGTCATTGTTCTGTCTCAAATCAACCATCGCAACGTGGTCAAGCTGCTGGGGTGCTGTTTGGAGACAAAAGTTCCTTTGTTGGTCTACGAGTTTGTAACCAATGGCACTCTCTTTGAACACATCCACAACAAAACAAACCATGCTCCTCTTTCCTGGGAAACTCGATTGAAGATAGCTTCAGAAATTGCTAGCGTCCTTGCATATTTGCATTCTTCCACTTCTACTCCCATCATCCACAGAGATATCAAGTCTTCTAATGTACTTTTAGACCATGATTACACAGCAAAGCTGTCTGATTTTGGAGCTTCAAAACTGGTACCGTTGGATCATACTCAGCTTTCCACGATGGTGCAAGGGACTCTTGGATATTTGGACCCTGAGTACTTGTTGACAAGTGAGTTGACGGAGAAAAGTGACGTGTACAGCTTCGGAATTTTGCTTTTTGAGCTTATCACGGGAAAGAAGGCGGTGCGTTTTGATGTCCCAGAAGAAGAAAGAACTCTAGCCAAGATAGTTCTGTGTGCAATGAATGAAGATCGTTTGGAAGAAATTGTTGAGGAGGGATTGGCAACAGAAGCAAATATTGAGGAGATACAAGAGGTGGCAAAGCTAGCAAAAGAGTGTGTAAGAGTTAAAGGGGAGGAGCGCCCCACCATGAAGGAGGTGGCTATAAAGTTGGAGGAGCTGCGAATGTTACATGCTTGA 1845 43.2 MKVGMGRPIDNLVLLMMLLFSAAASPDCDQRRCGNLEIPFPFGTRKGCYLSENFLITCNKTHKPPRAFIGDGNVIVTNISINDSELRILGLNKFVAIGCDTQAFISGKIEGDAYKGGCMALCGNSNKTLTDGHCAGNRCCELEIPKGLKYLEIVVRSFHQHNEVFDFNPCGYAFVIQQNNFTLSSKYIHMFTHVRVPLMLDWGIPNGCQDANECKDTRLNDCEHKQMCVNTQGNFTCSCPKNYKGDGRNKGKGCIPTYKAFDQYVIGCTVGLTLLVIGCTLLCLGYAKWKAIHQKKYFFKKNGGLVLEQHLSEWESPVEMFRIFTHEELKKATNKFHDSAVVGKGGFGTVYKGVLDDGLIIAIKKSKLVDQSQTDQFINEVIVLSQINHRNVVKLLGCCLETKVPLLVYEFVTNGTLFEHIHNKTNHAPLSWETRLKIASEIASVLAYLHSSTSTPIIHRDIKSSNVLLDHDYTAKLSDFGASKLVPLDHTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGILLFELITGKKAVRFDVPEEERTLAKIVLCAMNEDRLEEIVEEGLATEANIEEIQEVAKLAKECVRVKGEERPTMKEVAIKLEELRMLHA 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17713962 17716769 + ClG42_08g0076900.10 Clacu08g0769 255111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0769 614 Gene3D Phosphorylase Kinase; domain 1 308 411 - -
Clacu08g0769 614 FunFam Fibrillin 2 205 250 - -
Clacu08g0769 614 ProSitePatterns Calcium-binding EGF-like domain signature. 210 237 IPR018097 GO:0005509(InterPro)
Clacu08g0769 614 Pfam Wall-associated receptor kinase galacturonan-binding 28 88 IPR025287 GO:0030247(InterPro)
Clacu08g0769 614 Pfam Calcium-binding EGF domain 210 247 IPR049883 -
Clacu08g0769 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g0769 614 SUPERFAMILY EGF/Laminin 209 249 - -
Clacu08g0769 614 SMART egfca_6 210 255 IPR001881 GO:0005509(InterPro)
Clacu08g0769 614 Gene3D Transferase(Phosphotransferase) domain 1 412 613 - -
Clacu08g0769 614 CDD STKc_IRAK 342 609 - -
Clacu08g0769 614 Pfam Protein kinase domain 337 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0769 614 CDD EGF_CA 210 246 - -
Clacu08g0769 614 FunFam Wall-associated receptor kinase 2 412 614 - -
Clacu08g0769 614 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 610 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Clacu08g0769 614 SUPERFAMILY Protein kinase-like (PK-like) 312 608 IPR011009 -
Clacu08g0769 614 Gene3D Laminin 203 250 - -
Clacu08g0769 614 ProSiteProfiles EGF-like domain profile. 210 249 IPR000742 -
Clacu08g0769 614 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 228 239 IPR000152 -
Clacu08g0769 614 ProSitePatterns Protein kinases ATP-binding region signature. 342 365 IPR017441 GO:0005524(InterPro)
Clacu08g0769 614 FunFam Wall-associated receptor kinase 2 306 411 - -
Clacu08g0769 614 ProSiteProfiles Protein kinase domain profile. 336 614 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0769 614 SMART serkin_6 336 612 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0767 Clacu-Chr8:17687025 Clacu08g0769 Clacu-Chr8:17713962 1.40E-218 dispersed
Clacu08g0769 Clacu-Chr8:17713962 Clacu11g2096 Clacu-Chr11:31737545 3.20E-154 dispersed
Clacu08g0769 Clacu-Chr8:17713962 Clacu08g0771 Clacu-Chr8:17743888 3.00E-112 proximal
Clacu08g0768 Clacu-Chr8:17706675 Clacu08g0769 Clacu-Chr8:17713962 2.00E-206 tandem
Clacu08g0769 Clacu-Chr8:17713962 Clacu08g0770 Clacu-Chr8:17735191 1.60E-59 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73745 PF00069 Pkinase 2.30E-50 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0769 - - - 0.0