Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0771 ATGGCAATCACCCGACATGCTCAAAATTTTCACCCAAGAAGAGTTGGAGAAGGCTACAAACAAGTACGACGAAAGCACAGTGGTTGGCAAAAGTATGACGGTTTGGCAGTTGCAATCAAGAAATCAAAATTAGTGAACCAATCCCAAACTGACCAGTTCATTAACGAAGTCATCGTTTTGTCCCAAATCAACCATCGCATCGTGGTCAAACTCATAGGGTGTTGTTTGGAGACAAAGGTTCCATTGTTGGTGTACGAGTTCGTGACCAACGGCACACTCTTTGAACACATCCACCGCAAAACCAACCATGCTTATCTCCCATGGGAAGCTCGCTTGAAAATAGCTTCGGAAATTGCCGGCGTCCTTTCATATTTGCATTCTTCCGCTTCTACTCCAATTATCCATAGAGATATCAAGTCCAATAATATACTTTTAGACCAAAACTACACAGCAAAAGTCTCTGATTTCGGAACGTCAAAGCTTGTTCCGTTGGATCAAACTCAAATATCCACAATGGTGCAAGGGACAGTTGGGTATTTGGATCCAGAATATTTTTTGACGAGTGAGTTGACGGAGAAAAGCGATGTGTATAGCTTTGGGATTGTACTTCTAGAGCTTGTAACGGGGAAGAAGGCAGTGTGTTTTGATGGGCCAGAAGAAGAGAGGAATCTAGCGATGTATGTGCTGTTTGCAATGGAAGAAGATTGTGTGGAAGAAGTTGTGGAGAAGGGAATGGCGACAGAAGGAAACTTTGAGCAAATAAAAGAAGTGGCAAAACTGGCAAGAGAGTGTGTGAAAGTAAAAAGGGCGGAGCGGCCAACCATGAAGGAGGTAGCTATGGAGTTGGAGGGACTGAAACTGATGCAGGTTGAAAACTGTTCATGGGATAGAAGCAATTTGTTCGATGGAGCTTTAAACTCAAGCCAACATGTTTCCAATGATACGGACGAGAGCATCGAAAGCTGA 966 43.48 MAITRHAQNFHPRRVGEGYKQVRRKHSGWQKYDGLAVAIKKSKLVNQSQTDQFINEVIVLSQINHRIVVKLIGCCLETKVPLLVYEFVTNGTLFEHIHRKTNHAYLPWEARLKIASEIAGVLSYLHSSASTPIIHRDIKSNNILLDQNYTAKVSDFGTSKLVPLDQTQISTMVQGTVGYLDPEYFLTSELTEKSDVYSFGIVLLELVTGKKAVCFDGPEEERNLAMYVLFAMEEDCVEEVVEKGMATEGNFEQIKEVAKLARECVKVKRAERPTMKEVAMELEGLKLMQVENCSWDRSNLFDGALNSSQHVSNDTDESIES 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17743888 17744853 + ClG42_08g0077100.10 Clacu08g0771 255113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0771 321 FunFam Wall-associated receptor kinase 2 88 301 - -
Clacu08g0771 321 SUPERFAMILY Protein kinase-like (PK-like) 28 298 IPR011009 -
Clacu08g0771 321 PIRSF ILK 11 302 - -
Clacu08g0771 321 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Clacu08g0771 321 ProSiteProfiles Protein kinase domain profile. 4 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0771 321 Pfam Protein tyrosine and serine/threonine kinase 30 282 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g0771 321 Gene3D Transferase(Phosphotransferase) domain 1 88 301 - -
Clacu08g0771 321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g0771 321 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 32 292 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Clacu08g0771 321 SMART serkin_6 19 288 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0771 321 FunFam Wall-associated receptor kinase-like 10 31 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0771 Clacu-Chr8:17743888 Clacu11g1106 Clacu-Chr11:14104833 7.40E-94 dispersed
Clacu08g0769 Clacu-Chr8:17713962 Clacu08g0771 Clacu-Chr8:17743888 3.00E-112 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73746 PF07714 PK_Tyr_Ser-Thr 1.50E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0771 - - - 0.0