Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0775 ATGGGCGATATTACGACGAAATTCCCAAGAAAACCTACCCATAGCCCAGATCCTATCCCACGAACAGCCGCTTTCTATTATAAATCTCCAGAACAGGACTCCACTTCCGAAGATTGCATCATTTTCAGAGGCTGGGACAGTGCTGCTGCCGTCGACGATGACTCTCAATCGGAATCGGGGGTTTGTTCACCCACGCTTTGGGGTTCCAATTCTCGAACCAGCCCCCAATTTCACCGCCCTCGTAATCGCAGCCTCTCCCCAACTTCCCGAACCCAAGCCATAGCCAGAGGCCAACAGGAGCTCATGGAGATGGTCAGGAACATGCCCGAATCATCTTACGAGCTCTCTCTCAAAGATCTCGTTGAACATCACTTGACTAATTCGAAACGTCAACAAGACGGTGACGCTGCTTCCCTTTCAAGAGACGATTCCAGCTCTGAAACTTCCTTCCGAAGAGACCGTAGCAAGAACCGGAGTGAAACTAGGGCACTTGTTACCAGAAGTAAAAGCGTCGATAACGGTGGATTTTACCTCAAAATGTTCTTCCCACTGCCTTTCGGCCAGGTTTCGGCTAAAAAGAAGAGTAATCTTAGAACCGATTCGGGGTTGAGTGGTAGTTCGAGAGTGTCGCCGAAGCCACCACCGGTGGACAGAGACTGGTGGAGGAAGAGATCGTCGGTGGCTGGCGGCGAGAACGAGGGTAGTATCTCCGGCGGAAGCATGACGAGTAGCGGCAGTAGTAATAGCACTAGCAGCGAAAGAAGCAATAGCAGATCCGACCCATCGGCCCACTTTGGCTTTCGAGTTGACGTTGTCAACAAGTTTACTATGCCATTCATGTCGTGGACTCGTAAACAAAGTGGGACCCGATGGCCGGTAGTCTTAGTCCAGCACGAAAACGCGGTTTTACGGTCGAAATCGCATCGGCCATTCTTCAAAGTCTCCCTCACTGAAAAACTTCGACAAAGTCAAACCCATACACCCAAAGAAAAAGAAAGGAAAAAGACTCTGTGTTATGGAATTAATGGGATTTCCTCTATCACGGGGTCTCCGATGTGGGTTTTAACGCGGGGTTTGCATTTTCCCCATTCTTTTCTTTATCAGTGGGAGATTCAAGGACAGAAGGGCTTATTTGGGTGCAAAAGAATCAGAGAGATGTCTACCAATGCTGCTGCTTGCGCTGAGAGAGCTACAAATGATGTGCTTATCGCTCCCGATTGGGCGATAAATATTGAGCTCTGTGATATTATTAACATGGATCCTAGGCAAGCGAAGGATGCATTGAAGATACTCAAGAAGCGTCTTGCTGGCAAAAATCCTAAAATACAACTTCTAGCGCTCCATGTATTAGAGGCTGTAAGCAAAAATTGTGGCGATACTGTTTTTAGGCTGATTGTAGATCGTAATATCCTGCACGAAATGGTTAAAATTGTAAAGAAGAAGCCTGATTCAACTGTACGGGACAAAATATTAGCTTTGGTAGATGCATGGCAAGCAGCCTTTGGTGGTGGCCCCAAGGGAAAGTATCCACAGTACTATGCAGCCTACAATGAATTGAAGAATGCTGGATTTCAATTTCCACCTAGAGAAGAGAACGTTGGGCAGTTCTTTAGTCCACCTCAGATACAGCCAGTCACTGAGCACCCTGTTTCAGCCAGTTATGATGATCTTGCTGTTCAGGTTTCTCTCCAGTCTGATTCTTCTGGTTTAAGCTTGCCAGAAATTCAAAATGCACAGGGACTAGCAGATGTTCTATTGGAAATGCTTGGTGCGCTGGACCCTAAGACTCCCGAGGCTTTGAAGCAAGAAGTGATTGTTGATCTTGTTGATCAATGCCGTTCCTACCACAGCCGTGTCGTGATACTTGTGAATGAGACGACAGATGAGGAACTATTATGTCAAGGATTGGTATTGAATGACAGTCTGCAGCGTGTACTCAGCTACCACGATGACATTGCTAAAGGAACCTTTGTGACGGAAGCTAGAAGAGCAGAACCTCCCGTTCCATCGGTTCCATATATCAACCTTGAGGACGATGAGTCGGAAGATGACTTCACTCCGTTATCTCGCAGGCCAACGAGAGATCACGTTTATGAAAGGGACAGGAAACTGGCAAATGGTCAATCATCTCGAGTAAGTCCACTTCCTTCACCCTCATCAAATAAGTCGGCTGGTGCTGAAATGATGGATCATCTTAGCGGCGACATGTACAAACCTGAAGAGTCTCCAAGGATAGTTGAGCCACCATCAACTTCTTCTTCACCTTTCTACACTAGACAGCCTTTGTTCGACGAACCACCTCCAAGAAGCATGCCCACCAATACACTCCCGGCAACACCTCGGGACGCTCAATCTCCAAGTGCCCTCCCTCCCCCACCCTCAAGACATAATCAAAGACAACTATATTTTGAGCAACAAAAAGCTGTTACAGGAGGCACTCAGCCCCATTTGAGCAACGATTATAGTTCTTATGACACCATAGTTGGGAATACCAAGAATCTTTCACTCAGTCCTACCCCAACCAGATCCGCTGAGCATGAAGAGGCCCTTTTCAAAGATCTGGTGGATTTTGCCAAGGCCAAGTCATCTTCATCCTCCAAATCCAACCGACCATTCTGA 2619 47.23 MGDITTKFPRKPTHSPDPIPRTAAFYYKSPEQDSTSEDCIIFRGWDSAAAVDDDSQSESGVCSPTLWGSNSRTSPQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDLVEHHLTNSKRQQDGDAASLSRDDSSSETSFRRDRSKNRSETRALVTRSKSVDNGGFYLKMFFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPPPVDRDWWRKRSSVAGGENEGSISGGSMTSSGSSNSTSSERSNSRSDPSAHFGFRVDVVNKFTMPFMSWTRKQSGTRWPVVLVQHENAVLRSKSHRPFFKVSLTEKLRQSQTHTPKEKERKKTLCYGINGISSITGSPMWVLTRGLHFPHSFLYQWEIQGQKGLFGCKRIREMSTNAAACAERATNDVLIAPDWAINIELCDIINMDPRQAKDALKILKKRLAGKNPKIQLLALHVLEAVSKNCGDTVFRLIVDRNILHEMVKIVKKKPDSTVRDKILALVDAWQAAFGGGPKGKYPQYYAAYNELKNAGFQFPPREENVGQFFSPPQIQPVTEHPVSASYDDLAVQVSLQSDSSGLSLPEIQNAQGLADVLLEMLGALDPKTPEALKQEVIVDLVDQCRSYHSRVVILVNETTDEELLCQGLVLNDSLQRVLSYHDDIAKGTFVTEARRAEPPVPSVPYINLEDDESEDDFTPLSRRPTRDHVYERDRKLANGQSSRVSPLPSPSSNKSAGAEMMDHLSGDMYKPEESPRIVEPPSTSSSPFYTRQPLFDEPPPRSMPTNTLPATPRDAQSPSALPPPPSRHNQRQLYFEQQKAVTGGTQPHLSNDYSSYDTIVGNTKNLSLSPTPTRSAEHEEALFKDLVDFAKAKSSSSSKSNRPF 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17774810 17782673 - ClG42_08g0077500.10 Clacu08g0775 255117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0775 872 MobiDBLite consensus disorder prediction 684 706 - -
Clacu08g0775 872 MobiDBLite consensus disorder prediction 197 263 - -
Clacu08g0775 872 MobiDBLite consensus disorder prediction 52 91 - -
Clacu08g0775 872 MobiDBLite consensus disorder prediction 230 262 - -
Clacu08g0775 872 MobiDBLite consensus disorder prediction 707 726 - -
Clacu08g0775 872 Gene3D - 381 544 IPR008942 -
Clacu08g0775 872 SUPERFAMILY GAT-like domain 544 655 - -
Clacu08g0775 872 ProSiteProfiles GAT domain profile. 566 654 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Clacu08g0775 872 Pfam VHS domain 393 522 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Clacu08g0775 872 SUPERFAMILY ENTH/VHS domain 393 528 IPR008942 -
Clacu08g0775 872 PANTHER TOM1-LIKE PROTEIN 386 869 IPR044836 GO:0035091(InterPro)|GO:0043130(InterPro)|GO:0043328(InterPro)
Clacu08g0775 872 Gene3D - 563 659 IPR038425 -
Clacu08g0775 872 MobiDBLite consensus disorder prediction 798 824 - -
Clacu08g0775 872 CDD VHS 395 521 - -
Clacu08g0775 872 MobiDBLite consensus disorder prediction 667 824 - -
Clacu08g0775 872 MobiDBLite consensus disorder prediction 50 91 - -
Clacu08g0775 872 ProSiteProfiles VHS domain profile. 397 527 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Clacu08g0775 872 Pfam GAT domain 582 655 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Clacu08g0775 872 CDD GAT_GGA-like_plant 574 652 - -
Clacu08g0775 872 SMART VHS_2 390 523 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Clacu08g0775 872 MobiDBLite consensus disorder prediction 1 22 - -
Clacu08g0775 872 MobiDBLite consensus disorder prediction 127 166 - -
Clacu08g0775 872 MobiDBLite consensus disorder prediction 145 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0775 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0481 Clacu-Chr8:8030759 Clacu08g0775 Clacu-Chr8:17774810 4.50E-24 dispersed
Clacu08g0775 Clacu-Chr8:17774810 Clacu11g1008 Clacu-Chr11:12062227 4.00E-150 dispersed
Clacu08g0775 Clacu-Chr8:17774810 Clacu08g1388 Clacu-Chr8:23928886 2.70E-82 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g185 Blo01g01314 Blo12g01115 Bda01g00684 . Bpe02g00621 Bpe04g00015 Bma04g00022 Bma01g02098 . Cmo15g00650 . . . . . . . Bhi04g01843 Tan11g1214 . . . . . Cla08g00646 Cam08g1070 Cec08g0655 Cco08g0766 Clacu08g0775 . Cre08g0583 Cone4ag1441 . Cone17ag0809 Cone20ag0414 . Csa04g01732 . Cme03g00439 . . . . . . . . . . . . . Car04g02322 Car15g00588 Cpe01g02087 Cpe02g00872 . . . . . . . . . . . . . . Lsi08g00505 . Chy03g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001242 1 5 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 4 4 2 2 2 1 2 2 3 2 5 3 1 76