Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0784 ATGAACGATAACATGAAGTTGGAGATTCCACCGCCGTCGTTCCCCGCCGCCACCATCTCAACTGTGCTCCTGCTCCAAGCCTCCAAGGCTCCACCCCTGCAATTCCACGGACGATTCTTCTTTCCTTTTCCCTCTGCCTTTGCTCCCCCTCTTGGGGATGTCGATCAAGAGACCACTCTACGACCGCCTCAACCATCCTCTCCTCCGCCGCCGCTAGTTTCAGAAATTATAATGTCCTCGAGAGATTCTAACGTCCTTTTCAGTGGTGGCGGTATCAGTTTTCTCAATGAAAATCACACTGGAAAGTTCAGCTATGGATATTCTAGTTTCAAGGGCAAAAGGGCTTCGATGGAGGACTTCTATGAAACAAGAATTTCTGAAGTTGATGGGCAGATGGTCGCTTTTTTCGGTGTTTTTGATGGTCATGGAGGTTCCAGAACAGCTGAATACCTTAAGCGCAATCTTTTCAAGAACCTAAGTAGCCATCCAGACTTTATCAAAGACACAAGGACTGCTATTATTGAGGTCTTTAAGCAGACCGATGCCGATTATATCAATGAAGAGAAAGGACAGCAGAAAGATGCTGGGTCAACTGCATCAACTGCTGTATTGTTGGGGGATCGTCTCCTTGTTGCAAATGTTGGGGATTCTAGAGTAGTTGCATCGAGGGCTGGTTCAGCTATTCCCCTCTCTATTGATCACAAACCTGATAGATCAGACGAGCGCGAAAGGATTGAACAAGCTGGAGGGTTCATTCTTTGGGCAGGAACTTGGAGGGTTGGTGGTATTCTAGCAGTTTCACGTGCCTTTGGAGATAAGCTACTCAAACCATTTGTTGTCGCTGATCCCGAAATTAAGGAAGAAGAACTCGAAGGTGTAGATTTTATTATTATTGCAAGCGATGGACTTTGGAATGTCATCTCAAACGAGGAAGCTGTAGCATTGGTACAACACAACCAAGATGCAGAAATGGCATCAAGAAACCTAATCCAAGAAGCTTTTGCTCGAGGGAGTTCCGACAACATTACATGCGTCATTGACGTTCCTGCCCAATCTGTAGATTACTTAATACTTTGCCTTTATGATTATGGCATGCTGATATGTTCCAACTTTTGCTTCAAACTCATGTTGCACATGTCGTTTCAATGGGTGGTTAGCACTCTGGACTTTGAATCCAGCGACCTGGGTTCGACTCCCGGTAGGACCTTTATAATTTTCCATTTTCGCTTTTTGAAAACGGCATCACGGTGGGCCAATCTGAAACCCAGTAAAATTAGTCCATGCCCACGAAATGAAAGGCCCATTCCACAGCCCAAAAGAAGTAGCCGACAAAGCGGTAGAGTACACGTGGCTGTATACAAAAGGGCTGTCTCCACGAAAATGGTGAACGATACTGAGTATTACGACATTCTCGGTGTTCGTTCTTCGGCTTCTGAGGAGGAGATTCGTAAGGCCTATTATCTTAAGGCAAAACAAGTCCATCCGGATAAGAATTTGAATGATCCTCAAGCTGCTGAAAGGTTTCAGGCGTTAGGTGAAGCTTATCAAGTGTTGAGTGATGCAGTCCAAAGAGATGCATATGATAGGAATGGGAAACATAGTATTACTAGGGAATCCATGCTTGACCCTACTGCTGTTTTTGCACTTCTATTTGGGAGTGAATTATTTGAGGACTACATTGGACATTTAGCTGTAGCATCAATGGCCTCATCGGAATTAGAGAGCGAAATTGGCAATCCAGAGAGATTACATGATAAGTTGAAGGCAATCCAGAAAGAAAGAGAAGAAAAACTTGCACGTGTACTCGAGGGTTTTCTTAATCAATATGTTCTAGGTGACAAAGACGGATTCTTACGACATGCTGAATCTGAAGCCAAAAGACTTTCTAATGCGGCTTTTGGCGTTAATATATTACACACTATAGGCTACATTTATTCAAGACAAGCAGCACAAGAGCTTGGAAAGAGAGCCATTTATCTTGGCGTGCCATTTGTGGCTGAATGGTTTCGCAACAAGGGACATTTTTGGAAGTCACAGATAACAGCTGCAAAAGGTGCTTTTCAGTTGTTACAACTTCAAGATGATATTTGCCGGCAGTTTAAAATGGATGGTAGTGGTCCTGGAAATGATATTGAATCGCATATTCAAGCGAATAAAGACACATTCCTCAATTCTTTGTGGAAGCTTAATGTGGTTGACATAGAACTAACACTTATAAATGTGTGCCAGATGGTGCTACGCGATAATACTGTTAGAAAGGAAGAACTAAAAGCTCGTGCCCTGGCTCTGAAGATTCTTGGAAAGATATTCCAGGAGAAGCAGGCACAAAATGGTGGAACGTCAAGAAAGAAAGGTGCTGCTGCAATAGATGACGACGGAACGAGTTCAGAGAGCAGCGATGATGAGGACGATCCCCGAAGGCCGCTATCATATCGAACTCCTTTTCTTACTCAGGGTATAGGTAAACTCTTCAGATGCCTCTGTAACCCAGCATTTGATGTGGACGATGATGAAATTGTGTATAAAAGCAAATGA 2535 43.75 MNDNMKLEIPPPSFPAATISTVLLLQASKAPPLQFHGRFFFPFPSAFAPPLGDVDQETTLRPPQPSSPPPPLVSEIIMSSRDSNVLFSGGGISFLNENHTGKFSYGYSSFKGKRASMEDFYETRISEVDGQMVAFFGVFDGHGGSRTAEYLKRNLFKNLSSHPDFIKDTRTAIIEVFKQTDADYINEEKGQQKDAGSTASTAVLLGDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERERIEQAGGFILWAGTWRVGGILAVSRAFGDKLLKPFVVADPEIKEEELEGVDFIIIASDGLWNVISNEEAVALVQHNQDAEMASRNLIQEAFARGSSDNITCVIDVPAQSVDYLILCLYDYGMLICSNFCFKLMLHMSFQWVVSTLDFESSDLGSTPGRTFIIFHFRFLKTASRWANLKPSKISPCPRNERPIPQPKRSSRQSGRVHVAVYKRAVSTKMVNDTEYYDILGVRSSASEEEIRKAYYLKAKQVHPDKNLNDPQAAERFQALGEAYQVLSDAVQRDAYDRNGKHSITRESMLDPTAVFALLFGSELFEDYIGHLAVASMASSELESEIGNPERLHDKLKAIQKEREEKLARVLEGFLNQYVLGDKDGFLRHAESEAKRLSNAAFGVNILHTIGYIYSRQAAQELGKRAIYLGVPFVAEWFRNKGHFWKSQITAAKGAFQLLQLQDDICRQFKMDGSGPGNDIESHIQANKDTFLNSLWKLNVVDIELTLINVCQMVLRDNTVRKEELKARALALKILGKIFQEKQAQNGGTSRKKGAAAIDDDGTSSESSDDEDDPRRPLSYRTPFLTQGIGKLFRCLCNPAFDVDDDEIVYKSK 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17866112 17881189 - ClG42_08g0078400.10 Clacu08g0784 255126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0784 844 SMART PP2C_4 94 347 IPR001932 -
Clacu08g0784 844 Gene3D DnaJ domain 452 545 IPR036869 -
Clacu08g0784 844 PRINTS DnaJ domain signature 523 542 IPR001623 -
Clacu08g0784 844 PRINTS DnaJ domain signature 468 486 IPR001623 -
Clacu08g0784 844 PRINTS DnaJ domain signature 486 501 IPR001623 -
Clacu08g0784 844 PRINTS DnaJ domain signature 503 523 IPR001623 -
Clacu08g0784 844 MobiDBLite consensus disorder prediction 777 812 - -
Clacu08g0784 844 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 335 804 IPR052423 -
Clacu08g0784 844 ProSitePatterns Nt-dnaJ domain signature. 508 527 IPR018253 -
Clacu08g0784 844 ProSiteProfiles dnaJ domain profile. 466 531 IPR001623 -
Clacu08g0784 844 ProSitePatterns PPM-type phosphatase domain signature. 135 143 IPR000222 GO:0043169(InterPro)
Clacu08g0784 844 Gene3D - 95 350 IPR036457 -
Clacu08g0784 844 SUPERFAMILY Chaperone J-domain 460 561 IPR036869 -
Clacu08g0784 844 Pfam X-domain of DnaJ-containing 591 778 IPR026894 -
Clacu08g0784 844 CDD DnaJ 466 520 IPR001623 -
Clacu08g0784 844 ProSiteProfiles PPM-type phosphatase domain profile. 104 349 IPR001932 -
Clacu08g0784 844 Pfam Protein phosphatase 2C 105 342 IPR001932 -
Clacu08g0784 844 SMART dnaj_3 465 523 IPR001623 -
Clacu08g0784 844 Pfam DnaJ domain 466 528 IPR001623 -
Clacu08g0784 844 CDD PP2Cc 103 346 IPR001932 -
Clacu08g0784 844 MobiDBLite consensus disorder prediction 52 71 - -
Clacu08g0784 844 SUPERFAMILY PP2C-like 101 346 IPR036457 -
Clacu08g0784 844 MobiDBLite consensus disorder prediction 426 445 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1066 Clacu-Chr5:9525063 Clacu08g0784 Clacu-Chr8:17866112 2.30E-24 dispersed
Clacu05g1756 Clacu-Chr5:26642957 Clacu08g0784 Clacu-Chr8:17866112 5.00E-95 dispersed
Clacu08g0784 Clacu-Chr8:17866112 Clacu11g2104 Clacu-Chr11:31794872 1.20E-114 dispersed
Clacu08g0784 Clacu-Chr8:17866112 Clacu07g0239 Clacu-Chr7:2805238 4.00E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0784 - - - 0.0