Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0813 ATGTCCATATCAACAACGGTTTCATTGTTGCGAAGCCATCTTTGCTTGCTGAGAAACCGCTTTGGAGGCTATATTTCTGTTTTTGCTTCTCATTCTAAGAGTTTAAGCCGAGGACATGAGGATGTTTTTGATTCAGTGTTTCGAATGGAGTTTCTAGGACTTTGGCTTCGAAGGAGTGACAGATCTACACGGCTTTTGGGGAAGGACGAGGGGAAGGGAGCTGCGAAATTTTATCCTTTTAGCTATGCAAATGCCGACCGTGATATCGAGCAGGCACTAATTGCATTGAAGAAGGGTGCTCAACTACTAAAATATGGTCGTAAAGGAAAGCCGAAGTTCTGTCCATTTAGGCTTTCTAGTGATGAATCTTCCTTGATCTGGATTTCAAGTAAGGGTGAAAGAAGTTTGAAGTTAGCGTCAATCTCACAAATTATACCTGGACAAAGAACCGCTGTCTTCGAACGGTATCTTCGTCCTGAAAAAGATTACTTATCATTCTCTCTTATATACAACAACGGGAAGCGATCCCTTGATCTGATTTGTAAGGATAAAGTTGAGGCAGAGGCTTGGATTTCAGGCCTGAAAGCTTTAATAGCATCTGGTCAAGGTGGGCGTTCCAAAATTGATGGCTGGAGTGATGGAGGCCTCTATCTTGATGAAAGTTGTGAATTGACTTCAAATAGCCCAAGTGACAGTTCACACAGCGTGAATAGAGATAATAGCTCTCCAGAAGTTTTTGTTAGTTTCAACGCAAATATATCTCTGAAGACTTCTCAACCTGAAAATTACATTGCAAAGTCTGAAAGAGCTCATGTATCATTAAACCAAACAAATATGCAAGTAAAGGGGTCTAGTTCTGATGTTATGCGAGTTAGTGTTTCAAGTGCTCCCAGCACCTCTAGTCATGGGTCTGCACCCGATGATTGTGATGCTCTAGGTGATGTATACATATGGGGCGAGATTGTTGGGGACAATATAGTGAAGATTGGGGCTGAAAAAAATAGTAGTTACGTGACCCTGAGGACGGATGTGCTTCTGCCAAGACCTTTGGAGTCTAACATTGTTCTAGACATACATCATATAGCCTGTGGGGTTAGGCATGCTGCCCTAGTGACAAGGCAAGGGGAAGTTTTTACATGGGGTGAGGAATCTGGAGGTCGCCTTGGCCATGGTGTGGTGAAAGATGTAACTCAGCCTCGTATGGTTGAATCCTTGGCAGCTAGTAGTATTGATTTTGTTGCTTGTGGAGAGTTCCATACATGTGCTGTTACAATAACCGGGGAACTTTATACATGGGGTGATGGTACCCACAACGCAGGACTTCTTGGTCATGGCAGTGATGTCAGCCACTGGATACCAAAGAGAGTTTCTGGTCCGCTTGAAGGACTTCAAGTTACTTCAGTGACATGTGGTCCATGGCATACAGCTCTGGTAACGTCGACAGGTCAGCTTTTTACATTTGGTGATGGAACATTTGGTGCACTGGGCCATGGAGACAGAGAAAATATTTCATATCCAAAAGAAGTGGAATCTTTATCGGGCCTGAGGACAATTGCTGTTGCATGTGGGGTGTGGCATACTGCTGCTGTAGTTGAAGTTATTGTGACACAATCTAGTTCGAGCCTTTCATCAGGTAAACTTTTTACATGGGGTGATGGAGATAAAAATCGTCTGGGGCATGGAGATAAGGAGCCCAGGCTTAAACCCACATGTGTGCCAGCACTAATTGATTATGATTTCCACAAAGTTGCTTGTGGTCACAGCATTACTGTTGGTTTGACCACTTCAGGGCAAGTTTTCTCTATGGGAAGTACTGTTTATGGACAACTTGGGAATCCCAGTGCAGATGGAAAGATACCTTGCTTGGTAGAGGATAAGCTTTTTGGGGAATCTGTTGAAGAAGTTTCATGTGGTGCATATCATGTGGTGGTATTAACGTCCAAAAATGAAGTTTATACGTGGGGAAAGGGTGCAAATGGGAGATTGGGCCATGGTGATGTTGAAGATCGGAAGACACCAACTTTGGTAGAAGCTTTGAAGGACAGACATGTGAAATATATAGCATGTGGTTCAAATTACACAGCTGCCATTTGTCTTCACAAATGGGTTTCTAGTGCTGAGCAGTCACAGTGCTCTGCTTGCAGGCAGGCATTTGGGTTTACACGGAAGAGACACAACTGTTATAATTGTGGACTTGTGCACTGCCACTCTTGCAGTTCAAGAAAAGCATTAAGGGCAGCACTTGCTCCAAATCCCGGCAAACTATATCGTGTATGTGATTCATGTTATGCAAAATTGATTAAGGCAGCAGATGCTATTAATAATAATAGGAAAAATGCTATGCCTCGCCTCTCAGGTGAGAACAAGGATAGGATTGATAAGACTGATCTGAAAATATCGAAGTCAGTTCCTTCCAACATGGATTTGATAAAGCAATTAGACAACAAAGCAGCTAAACAAGGAAAGAAGGCTGATACCTTCTCCCTTGTCCGATCCTCTCAAGCACCTTCACTATTGCAGCTCAGAGATGTTGTATTATCAACTGCTGTTGATCTGCGACGGACAGCTCCCAAACCAGTCCTCACTGCTTCTGGAGTAAGTTCTAGATCTGTGTCGCCTTTCTCAAGGAAACCAAGCCCTCCTCGATCTGCCACTCCTGTTCCTACAGCATCTGGACTTTCCTTTTCCAAAAGTATAACTGATAGTTTGAAGAAAACAAACGACCTTTTGAATCACGAAGTGCTTAAATTGCGTTCACAGGTTGAGAGCCTGAGGCAGAAATGTGAACTCCAGGAACTGGAGCTTCAGAAATCTTTGAAGAAAACACGAGAAGCTATGGCCTTGGCTGCCGAGGAATCTGGTAAATCTAAAGCAGCCAAAGAAGTCATCAAGTTACTAACTGCTCAGCTTAAAGATATGGCTGAAAGGTTACCACCTGGAGTATATGACGCTGAGAAAATGAGATCAGTTCATCTTTCAAATGGTTTGGAGTCAAATGGCGGCTACCATTTGGGTATGAATGGAGAGCGTCATTCACGATCTGATTCAGTTAGTAGCTACTCCTGTGCATCTCCAACGGCATCTGAAGCTGCTGCTTGGCAAGGAAGCTATGGCACAACTCATTCATATAGGGAGCTTTCTGGAACGAATGAAAGCACTTTGCAACAAGATAGAATTGACAATCGAGATTCTAGACTTCTAAATAGCGGAGGGGCTCAGCCAGTTAGTAGTAGTGCATCAGTGGCAGCTGTTGGTAAGGAGTCTGAGTCCTTACAAGATGGTGACAATAATTCTAAAGCCAAAACTTCTCTAATGGTTAATGCTACTCAAGTTGAGGCTGAATGGATTGAACAATATGAGCCTGGTGTATATATTACTCTTGTGGCTCTGCGGGATGGTACTCGGGATCTAAAACGTGTGCGCTTCAGCCGGAGAAGATTTGGAGAGCATCAAGCAGAAAATTGGTGGTCAGAGAACCGTGAGAAGGTATACGAGAGATATAATGTTCGCAGCTCGGACAAGTCTTCAGTTTCGGGACTGACGTCACAGAGAGCAGACGATGCAGTTTCAATAGCTTCCCAACAACTATAG 3591 43.61 MSISTTVSLLRSHLCLLRNRFGGYISVFASHSKSLSRGHEDVFDSVFRMEFLGLWLRRSDRSTRLLGKDEGKGAAKFYPFSYANADRDIEQALIALKKGAQLLKYGRKGKPKFCPFRLSSDESSLIWISSKGERSLKLASISQIIPGQRTAVFERYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEAWISGLKALIASGQGGRSKIDGWSDGGLYLDESCELTSNSPSDSSHSVNRDNSSPEVFVSFNANISLKTSQPENYIAKSERAHVSLNQTNMQVKGSSSDVMRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEIVGDNIVKIGAEKNSSYVTLRTDVLLPRPLESNIVLDIHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVVKDVTQPRMVESLAASSIDFVACGEFHTCAVTITGELYTWGDGTHNAGLLGHGSDVSHWIPKRVSGPLEGLQVTSVTCGPWHTALVTSTGQLFTFGDGTFGALGHGDRENISYPKEVESLSGLRTIAVACGVWHTAAVVEVIVTQSSSSLSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYDFHKVACGHSITVGLTTSGQVFSMGSTVYGQLGNPSADGKIPCLVEDKLFGESVEEVSCGAYHVVVLTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYTAAICLHKWVSSAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKLYRVCDSCYAKLIKAADAINNNRKNAMPRLSGENKDRIDKTDLKISKSVPSNMDLIKQLDNKAAKQGKKADTFSLVRSSQAPSLLQLRDVVLSTAVDLRRTAPKPVLTASGVSSRSVSPFSRKPSPPRSATPVPTASGLSFSKSITDSLKKTNDLLNHEVLKLRSQVESLRQKCELQELELQKSLKKTREAMALAAEESGKSKAAKEVIKLLTAQLKDMAERLPPGVYDAEKMRSVHLSNGLESNGGYHLGMNGERHSRSDSVSSYSCASPTASEAAAWQGSYGTTHSYRELSGTNESTLQQDRIDNRDSRLLNSGGAQPVSSSASVAAVGKESESLQDGDNNSKAKTSLMVNATQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAENWWSENREKVYERYNVRSSDKSSVSGLTSQRADDAVSIASQQL 1196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18189910 18201333 + ClG42_08g0081300.10 Clacu08g0813 255155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0813 1196 MobiDBLite consensus disorder prediction 861 878 - -
Clacu08g0813 1196 Pfam Regulator of chromosome condensation (RCC1) repeat 650 697 IPR000408 -
Clacu08g0813 1196 Pfam Regulator of chromosome condensation (RCC1) repeat 427 478 IPR000408 -
Clacu08g0813 1196 Pfam Regulator of chromosome condensation (RCC1) repeat 482 530 IPR000408 -
Clacu08g0813 1196 Pfam Regulator of chromosome condensation (RCC1) repeat 544 592 IPR000408 -
Clacu08g0813 1196 Pfam Regulator of chromosome condensation (RCC1) repeat 374 423 IPR000408 -
Clacu08g0813 1196 Pfam Regulator of chromosome condensation (RCC1) repeat 596 645 IPR000408 -
Clacu08g0813 1196 CDD PH_PLC_plant-like 87 199 - -
Clacu08g0813 1196 FunFam PH, RCC1 and FYVE domains-containing protein 1 284 534 - -
Clacu08g0813 1196 FunFam PH, RCC1 and FYVE domains-containing protein 1 535 706 - -
Clacu08g0813 1196 Gene3D - 88 204 IPR011993 -
Clacu08g0813 1196 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 705 767 IPR017455 -
Clacu08g0813 1196 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 482 533 IPR000408 -
Clacu08g0813 1196 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 468 478 IPR000408 -
Clacu08g0813 1196 ProSiteProfiles BRX domain profile. 1113 1168 IPR013591 -
Clacu08g0813 1196 Coils Coil 907 941 - -
Clacu08g0813 1196 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 596 IPR000408 -
Clacu08g0813 1196 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 649 700 IPR000408 -
Clacu08g0813 1196 MobiDBLite consensus disorder prediction 861 891 - -
Clacu08g0813 1196 MobiDBLite consensus disorder prediction 1064 1099 - -
Clacu08g0813 1196 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 361 371 IPR000408 -
Clacu08g0813 1196 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 597 648 IPR000408 -
Clacu08g0813 1196 Pfam FYVE zinc finger 701 766 IPR000306 GO:0046872(InterPro)
Clacu08g0813 1196 SUPERFAMILY FYVE/PHD zinc finger 701 777 IPR011011 -
Clacu08g0813 1196 SMART fyve_4 700 768 IPR000306 GO:0046872(InterPro)
Clacu08g0813 1196 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 520 530 IPR000408 -
Clacu08g0813 1196 Gene3D - 534 713 IPR009091 -
Clacu08g0813 1196 PRINTS Chromosome condensation regulator RCC1 signature 484 498 IPR000408 -
Clacu08g0813 1196 PRINTS Chromosome condensation regulator RCC1 signature 586 604 IPR000408 -
Clacu08g0813 1196 PRINTS Chromosome condensation regulator RCC1 signature 468 484 IPR000408 -
Clacu08g0813 1196 PRINTS Chromosome condensation regulator RCC1 signature 427 443 IPR000408 -
Clacu08g0813 1196 PRINTS Chromosome condensation regulator RCC1 signature 644 665 IPR000408 -
Clacu08g0813 1196 PRINTS Chromosome condensation regulator RCC1 signature 377 393 IPR000408 -
Clacu08g0813 1196 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 375 426 IPR000408 -
Clacu08g0813 1196 ProSiteProfiles PH domain profile. 166 199 IPR001849 -
Clacu08g0813 1196 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 232 1142 IPR051210 -
Clacu08g0813 1196 Pfam Transcription factor BRX N-terminal domain 951 987 IPR027988 -
Clacu08g0813 1196 CDD FYVE_like_SF 710 763 - -
Clacu08g0813 1196 Pfam Pleckstrin homology domain 90 198 IPR001849 -
Clacu08g0813 1196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 714 773 IPR013083 -
Clacu08g0813 1196 Gene3D - 438 533 IPR009091 -
Clacu08g0813 1196 Gene3D - 244 437 IPR009091 -
Clacu08g0813 1196 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 427 481 IPR000408 -
Clacu08g0813 1196 Coils Coil 956 976 - -
Clacu08g0813 1196 MobiDBLite consensus disorder prediction 1066 1085 - -
Clacu08g0813 1196 Pfam Transcription factor regulating root and shoot growth via Pin3 1112 1167 IPR013591 -
Clacu08g0813 1196 SUPERFAMILY RCC1/BLIP-II 312 702 IPR009091 -
Clacu08g0813 1196 MobiDBLite consensus disorder prediction 1001 1021 - -
Clacu08g0813 1196 SUPERFAMILY PH domain-like 88 198 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0813 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2339 Clacu-Chr2:36475705 Clacu08g0813 Clacu-Chr8:18189910 3.40E-300 dispersed
Clacu08g0813 Clacu-Chr8:18189910 Clacu09g0987 Clacu-Chr9:9304929 0.00E+00 dispersed
Clacu08g0813 Clacu-Chr8:18189910 Clacu03g1309 Clacu-Chr3:25191870 1.70E-305 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83